Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03995

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03990 and CA264_03995 are separated by 289 nucleotidesCA264_03995 and CA264_04000 are separated by 396 nucleotides CA264_03990: CA264_03990 - alkyl hydroperoxide reductase, at 925,628 to 926,272 _03990 CA264_03995: CA264_03995 - hypothetical protein, at 926,562 to 926,924 _03995 CA264_04000: CA264_04000 - hypothetical protein, at 927,321 to 928,562 _04000 Position (kb) 926 927Strain fitness (log2 ratio) -2 -1 0 1 2 3at 925.620 kb on - strandat 925.678 kb on - strandat 925.726 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.813 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.970 kb on + strand, within CA264_03990at 926.026 kb on + strand, within CA264_03990at 926.071 kb on + strand, within CA264_03990at 926.072 kb on - strand, within CA264_03990at 926.162 kb on + strand, within CA264_03990at 926.200 kb on - strand, within CA264_03990at 926.260 kb on + strandat 926.381 kb on + strandat 926.381 kb on + strandat 926.411 kb on + strandat 926.424 kb on + strandat 926.424 kb on + strandat 926.424 kb on + strandat 926.440 kb on - strandat 926.469 kb on + strandat 926.469 kb on + strandat 926.470 kb on - strandat 926.470 kb on - strandat 926.557 kb on - strandat 926.563 kb on + strandat 926.629 kb on - strand, within CA264_03995at 926.630 kb on + strand, within CA264_03995at 926.634 kb on + strand, within CA264_03995at 926.634 kb on + strand, within CA264_03995at 926.635 kb on - strand, within CA264_03995at 926.639 kb on + strand, within CA264_03995at 926.685 kb on - strand, within CA264_03995at 926.688 kb on + strand, within CA264_03995at 926.689 kb on - strand, within CA264_03995at 926.697 kb on + strand, within CA264_03995at 926.697 kb on + strand, within CA264_03995at 926.697 kb on + strand, within CA264_03995at 926.698 kb on - strand, within CA264_03995at 926.925 kb on - strandat 926.939 kb on + strandat 926.943 kb on - strandat 927.004 kb on - strandat 927.009 kb on - strandat 927.053 kb on - strandat 927.064 kb on - strandat 927.065 kb on + strandat 927.089 kb on + strandat 927.089 kb on + strandat 927.119 kb on + strandat 927.163 kb on + strandat 927.164 kb on - strandat 927.182 kb on - strandat 927.205 kb on + strandat 927.207 kb on + strandat 927.208 kb on - strandat 927.238 kb on + strandat 927.243 kb on + strandat 927.243 kb on + strandat 927.245 kb on + strandat 927.245 kb on + strandat 927.246 kb on - strandat 927.252 kb on + strandat 927.253 kb on - strandat 927.253 kb on - strandat 927.253 kb on - strandat 927.253 kb on - strandat 927.257 kb on + strandat 927.257 kb on + strandat 927.258 kb on - strandat 927.259 kb on + strandat 927.259 kb on + strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.262 kb on + strandat 927.283 kb on + strandat 927.302 kb on + strandat 927.303 kb on - strandat 927.320 kb on + strandat 927.450 kb on + strand, within CA264_04000at 927.451 kb on - strand, within CA264_04000at 927.458 kb on + strand, within CA264_04000at 927.486 kb on + strand, within CA264_04000at 927.486 kb on + strand, within CA264_04000at 927.486 kb on + strand, within CA264_04000at 927.487 kb on - strand, within CA264_04000at 927.488 kb on + strand, within CA264_04000at 927.488 kb on + strand, within CA264_04000at 927.489 kb on - strand, within CA264_04000at 927.489 kb on - strand, within CA264_04000at 927.591 kb on - strand, within CA264_04000at 927.675 kb on + strand, within CA264_04000at 927.700 kb on - strand, within CA264_04000at 927.700 kb on - strand, within CA264_04000at 927.789 kb on + strand, within CA264_04000at 927.789 kb on + strand, within CA264_04000at 927.789 kb on + strand, within CA264_04000at 927.790 kb on - strand, within CA264_04000at 927.790 kb on - strand, within CA264_04000at 927.803 kb on - strand, within CA264_04000at 927.803 kb on - strand, within CA264_04000

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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925,620 - +0.2
925,678 - -0.9
925,726 + CA264_03990 0.15 -0.5
925,735 + CA264_03990 0.17 -0.5
925,735 + CA264_03990 0.17 -0.1
925,736 - CA264_03990 0.17 -0.5
925,736 - CA264_03990 0.17 -2.0
925,813 + CA264_03990 0.29 -0.1
925,910 + CA264_03990 0.44 +0.1
925,910 + CA264_03990 0.44 -0.7
925,910 + CA264_03990 0.44 +1.2
925,910 + CA264_03990 0.44 -0.5
925,910 + CA264_03990 0.44 +1.4
925,970 + CA264_03990 0.53 +0.5
926,026 + CA264_03990 0.62 +0.5
926,071 + CA264_03990 0.69 +0.4
926,072 - CA264_03990 0.69 -0.5
926,162 + CA264_03990 0.83 +1.9
926,200 - CA264_03990 0.89 -0.3
926,260 + -1.4
926,381 + +0.6
926,381 + +0.5
926,411 + -0.4
926,424 + -0.1
926,424 + +0.4
926,424 + -1.4
926,440 - -0.9
926,469 + -0.6
926,469 + +0.1
926,470 - -1.7
926,470 - +0.4
926,557 - +0.4
926,563 + +0.2
926,629 - CA264_03995 0.18 -0.4
926,630 + CA264_03995 0.19 -0.5
926,634 + CA264_03995 0.20 -1.9
926,634 + CA264_03995 0.20 -0.1
926,635 - CA264_03995 0.20 -0.4
926,639 + CA264_03995 0.21 +0.1
926,685 - CA264_03995 0.34 -0.6
926,688 + CA264_03995 0.35 -0.9
926,689 - CA264_03995 0.35 +0.2
926,697 + CA264_03995 0.37 -0.5
926,697 + CA264_03995 0.37 -0.4
926,697 + CA264_03995 0.37 -0.9
926,698 - CA264_03995 0.37 +0.0
926,925 - +0.7
926,939 + -0.2
926,943 - -1.2
927,004 - -1.5
927,009 - -0.1
927,053 - +0.2
927,064 - -1.5
927,065 + +0.4
927,089 + +0.6
927,089 + -0.0
927,119 + +0.5
927,163 + +0.5
927,164 - +0.1
927,182 - +0.0
927,205 + -0.6
927,207 + +0.3
927,208 - +0.1
927,238 + -1.2
927,243 + +0.3
927,243 + +0.5
927,245 + -1.4
927,245 + +0.6
927,246 - -0.4
927,252 + +2.1
927,253 - +1.9
927,253 - +1.4
927,253 - -1.6
927,253 - -0.4
927,257 + +0.9
927,257 + +1.7
927,258 - -0.4
927,259 + +0.3
927,259 + -0.1
927,260 - -2.1
927,260 - -0.6
927,260 - +0.3
927,260 - -0.3
927,260 - +0.7
927,260 - +0.2
927,260 - -0.2
927,262 + -0.6
927,283 + -1.1
927,302 + +0.2
927,303 - -0.4
927,320 + -0.8
927,450 + CA264_04000 0.10 +0.9
927,451 - CA264_04000 0.10 -0.6
927,458 + CA264_04000 0.11 -0.1
927,486 + CA264_04000 0.13 -0.4
927,486 + CA264_04000 0.13 +0.3
927,486 + CA264_04000 0.13 +3.3
927,487 - CA264_04000 0.13 -1.1
927,488 + CA264_04000 0.13 +0.1
927,488 + CA264_04000 0.13 -1.5
927,489 - CA264_04000 0.14 -0.2
927,489 - CA264_04000 0.14 -0.5
927,591 - CA264_04000 0.22 -0.4
927,675 + CA264_04000 0.29 -1.4
927,700 - CA264_04000 0.31 -0.6
927,700 - CA264_04000 0.31 -0.3
927,789 + CA264_04000 0.38 -1.2
927,789 + CA264_04000 0.38 -1.1
927,789 + CA264_04000 0.38 -0.3
927,790 - CA264_04000 0.38 -0.3
927,790 - CA264_04000 0.38 -0.5
927,803 - CA264_04000 0.39 -0.4
927,803 - CA264_04000 0.39 -1.1

Or see this region's nucleotide sequence