Experiment: m.b. Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01785 and CA264_01790 are separated by 33 nucleotides CA264_01790 and CA264_01795 are separated by 154 nucleotides CA264_01795 and CA264_01800 are separated by 144 nucleotides CA264_01800 and CA264_01805 are separated by 38 nucleotides
CA264_01785: CA264_01785 - hypothetical protein, at 422,356 to 422,796
_01785
CA264_01790: CA264_01790 - hypothetical protein, at 422,830 to 423,120
_01790
CA264_01795: CA264_01795 - hypothetical protein, at 423,275 to 423,592
_01795
CA264_01800: CA264_01800 - gluconate kinase, at 423,737 to 425,260
_01800
CA264_01805: CA264_01805 - 6-phosphogluconate dehydrogenase (decarboxylating), at 425,299 to 426,198
_01805
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 422.790 kb on + strand at 422.829 kb on + strand at 422.918 kb on + strand, within CA264_01790 at 422.978 kb on + strand, within CA264_01790 at 423.136 kb on + strand at 423.137 kb on - strand at 423.142 kb on + strand at 423.142 kb on + strand at 423.143 kb on - strand at 423.143 kb on - strand at 423.161 kb on + strand at 423.177 kb on + strand at 423.178 kb on - strand at 423.254 kb on - strand at 423.338 kb on - strand, within CA264_01795 at 423.390 kb on - strand, within CA264_01795 at 423.501 kb on - strand, within CA264_01795 at 423.624 kb on - strand at 423.635 kb on + strand at 423.635 kb on + strand at 423.636 kb on - strand at 423.636 kb on - strand at 423.673 kb on + strand at 423.673 kb on + strand at 423.673 kb on + strand at 423.685 kb on + strand at 423.686 kb on - strand at 423.686 kb on - strand at 423.696 kb on + strand at 423.708 kb on + strand at 423.708 kb on + strand at 423.708 kb on + strand at 423.709 kb on - strand at 423.712 kb on + strand at 423.712 kb on + strand at 423.713 kb on - strand at 423.713 kb on - strand at 423.723 kb on - strand at 423.755 kb on - strand at 423.822 kb on - strand at 423.849 kb on + strand at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.104 kb on + strand, within CA264_01800 at 424.105 kb on - strand, within CA264_01800 at 424.105 kb on - strand, within CA264_01800 at 424.107 kb on - strand, within CA264_01800 at 424.232 kb on + strand, within CA264_01800 at 424.253 kb on - strand, within CA264_01800 at 424.341 kb on + strand, within CA264_01800 at 424.341 kb on + strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.420 kb on + strand, within CA264_01800 at 424.593 kb on - strand, within CA264_01800 at 424.677 kb on - strand, within CA264_01800 at 424.721 kb on + strand, within CA264_01800 at 424.722 kb on - strand, within CA264_01800 at 424.853 kb on + strand, within CA264_01800 at 424.854 kb on - strand, within CA264_01800 at 424.854 kb on - strand, within CA264_01800 at 425.090 kb on + strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.183 kb on + strand at 425.184 kb on - strand at 425.196 kb on - strand at 425.258 kb on + strand at 425.258 kb on + strand at 425.258 kb on + strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.262 kb on + strand at 425.262 kb on + strand at 425.263 kb on - strand at 425.263 kb on - strand at 425.265 kb on - strand at 425.268 kb on + strand at 425.268 kb on - strand at 425.269 kb on - strand at 425.269 kb on - strand at 425.336 kb on - strand at 425.478 kb on + strand, within CA264_01805 at 425.550 kb on - strand, within CA264_01805 at 425.833 kb on + strand, within CA264_01805 at 425.878 kb on - strand, within CA264_01805 at 426.126 kb on + strand at 426.126 kb on + strand at 426.127 kb on - strand at 426.236 kb on + strand at 426.236 kb on + strand at 426.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol% remove 422,790 + +0.2 422,829 + -1.8 422,918 + CA264_01790 0.30 -0.4 422,978 + CA264_01790 0.51 -0.3 423,136 + -0.2 423,137 - +0.8 423,142 + +1.0 423,142 + +0.3 423,143 - +0.0 423,143 - -0.6 423,161 + -0.2 423,177 + -0.2 423,178 - -1.0 423,254 - +1.0 423,338 - CA264_01795 0.20 -0.5 423,390 - CA264_01795 0.36 -0.3 423,501 - CA264_01795 0.71 -0.6 423,624 - -1.8 423,635 + +0.1 423,635 + +0.1 423,636 - +0.9 423,636 - -0.4 423,673 + -0.6 423,673 + +1.0 423,673 + -0.4 423,685 + -3.3 423,686 - -1.6 423,686 - +0.4 423,696 + +1.0 423,708 + +0.4 423,708 + +0.7 423,708 + -0.6 423,709 - -0.2 423,712 + +0.1 423,712 + +0.0 423,713 - +1.0 423,713 - -0.8 423,723 - +0.7 423,755 - -0.1 423,822 - -0.5 423,849 + -0.2 424,104 + CA264_01800 0.24 -0.1 424,104 + CA264_01800 0.24 +0.4 424,104 + CA264_01800 0.24 -0.4 424,104 + CA264_01800 0.24 -1.3 424,104 + CA264_01800 0.24 -0.3 424,105 - CA264_01800 0.24 -0.8 424,105 - CA264_01800 0.24 +1.0 424,107 - CA264_01800 0.24 +0.0 424,232 + CA264_01800 0.32 -0.8 424,253 - CA264_01800 0.34 -1.0 424,341 + CA264_01800 0.40 -0.3 424,341 + CA264_01800 0.40 +0.0 424,380 - CA264_01800 0.42 +0.3 424,380 - CA264_01800 0.42 -0.6 424,407 - CA264_01800 0.44 -0.5 424,407 - CA264_01800 0.44 +1.4 424,420 + CA264_01800 0.45 +0.3 424,593 - CA264_01800 0.56 -0.1 424,677 - CA264_01800 0.62 -0.6 424,721 + CA264_01800 0.65 -0.3 424,722 - CA264_01800 0.65 -1.1 424,853 + CA264_01800 0.73 +2.0 424,854 - CA264_01800 0.73 +0.4 424,854 - CA264_01800 0.73 -1.8 425,090 + CA264_01800 0.89 +2.0 425,091 - CA264_01800 0.89 -0.6 425,091 - CA264_01800 0.89 +0.1 425,091 - CA264_01800 0.89 +0.4 425,091 - CA264_01800 0.89 +0.6 425,091 - CA264_01800 0.89 -0.6 425,183 + -1.6 425,184 - -1.0 425,196 - +0.4 425,258 + +2.0 425,258 + -1.1 425,258 + -0.1 425,259 - +0.5 425,259 - -0.1 425,259 - +0.0 425,259 - -0.6 425,262 + -0.1 425,262 + +1.4 425,263 - -0.2 425,263 - +0.0 425,265 - -0.1 425,268 + -0.4 425,268 - +0.3 425,269 - +0.4 425,269 - -0.7 425,336 - +0.6 425,478 + CA264_01805 0.20 -1.1 425,550 - CA264_01805 0.28 -0.4 425,833 + CA264_01805 0.59 -0.6 425,878 - CA264_01805 0.64 -0.3 426,126 + +0.9 426,126 + -0.6 426,127 - +0.2 426,236 + +0.6 426,236 + +0.0 426,240 + -0.4
Or see this region's nucleotide sequence