Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00245

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00235 and CA264_00240 overlap by 37 nucleotidesCA264_00240 and CA264_00245 overlap by 4 nucleotidesCA264_00245 and CA264_00250 are separated by 139 nucleotides CA264_00235: CA264_00235 - hypothetical protein, at 57,795 to 58,112 _00235 CA264_00240: CA264_00240 - hypothetical protein, at 58,076 to 58,672 _00240 CA264_00245: CA264_00245 - hypothetical protein, at 58,669 to 59,571 _00245 CA264_00250: CA264_00250 - hypothetical protein, at 59,711 to 62,431 _00250 Position (kb) 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 57.669 kb on - strandat 57.669 kb on - strandat 57.669 kb on - strandat 57.669 kb on - strandat 57.669 kb on - strandat 57.672 kb on + strandat 57.673 kb on - strandat 57.678 kb on + strandat 57.702 kb on - strandat 57.703 kb on + strandat 57.704 kb on - strandat 57.739 kb on + strandat 57.740 kb on - strandat 57.740 kb on - strandat 57.740 kb on - strandat 57.744 kb on + strandat 57.744 kb on + strandat 57.745 kb on - strandat 57.745 kb on - strandat 57.800 kb on + strandat 57.801 kb on - strandat 57.802 kb on + strandat 57.803 kb on - strandat 57.803 kb on - strandat 57.818 kb on + strandat 57.819 kb on - strandat 57.930 kb on - strand, within CA264_00235at 57.986 kb on + strand, within CA264_00235at 57.987 kb on - strand, within CA264_00235at 57.987 kb on - strand, within CA264_00235at 58.029 kb on + strand, within CA264_00235at 58.029 kb on + strand, within CA264_00235at 58.030 kb on - strand, within CA264_00235at 58.030 kb on - strand, within CA264_00235at 58.064 kb on - strand, within CA264_00235at 58.099 kb on - strandat 58.264 kb on + strand, within CA264_00240at 58.321 kb on - strand, within CA264_00240at 58.365 kb on - strand, within CA264_00240at 58.485 kb on + strand, within CA264_00240at 58.493 kb on + strand, within CA264_00240at 58.522 kb on - strand, within CA264_00240at 58.588 kb on + strand, within CA264_00240at 58.635 kb on + strandat 58.663 kb on + strandat 58.664 kb on - strandat 58.782 kb on + strand, within CA264_00245at 58.971 kb on + strand, within CA264_00245at 59.002 kb on + strand, within CA264_00245at 59.002 kb on + strand, within CA264_00245at 59.134 kb on - strand, within CA264_00245at 59.226 kb on + strand, within CA264_00245at 59.313 kb on - strand, within CA264_00245at 59.447 kb on + strand, within CA264_00245at 59.448 kb on - strand, within CA264_00245at 59.513 kb on + strandat 59.513 kb on + strandat 59.513 kb on + strandat 59.548 kb on + strandat 59.560 kb on + strandat 59.561 kb on - strandat 59.561 kb on - strandat 59.585 kb on - strandat 59.600 kb on - strandat 59.600 kb on - strandat 59.601 kb on + strandat 59.684 kb on + strandat 59.728 kb on - strandat 59.728 kb on - strandat 59.749 kb on + strandat 59.751 kb on + strandat 59.752 kb on - strandat 59.769 kb on - strandat 59.772 kb on - strandat 59.772 kb on - strandat 59.808 kb on + strandat 59.809 kb on - strandat 59.815 kb on - strandat 59.958 kb on - strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.970 kb on + strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 59.971 kb on - strandat 60.018 kb on + strand, within CA264_00250at 60.019 kb on - strand, within CA264_00250at 60.022 kb on + strand, within CA264_00250at 60.022 kb on + strand, within CA264_00250at 60.022 kb on + strand, within CA264_00250at 60.022 kb on + strand, within CA264_00250at 60.023 kb on - strand, within CA264_00250at 60.068 kb on + strand, within CA264_00250at 60.068 kb on + strand, within CA264_00250at 60.068 kb on + strand, within CA264_00250at 60.222 kb on - strand, within CA264_00250at 60.227 kb on - strand, within CA264_00250at 60.227 kb on - strand, within CA264_00250at 60.236 kb on - strand, within CA264_00250at 60.293 kb on - strand, within CA264_00250at 60.341 kb on + strand, within CA264_00250at 60.362 kb on + strand, within CA264_00250at 60.363 kb on - strand, within CA264_00250at 60.383 kb on + strand, within CA264_00250at 60.384 kb on - strand, within CA264_00250

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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57,669 - +0.2
57,669 - -0.3
57,669 - -0.1
57,669 - -0.2
57,669 - -1.0
57,672 + +0.0
57,673 - -0.2
57,678 + -0.0
57,702 - +0.2
57,703 + +0.9
57,704 - +0.2
57,739 + -0.5
57,740 - -1.2
57,740 - +1.2
57,740 - -0.4
57,744 + -1.8
57,744 + +0.9
57,745 - +0.9
57,745 - -0.1
57,800 + +1.0
57,801 - -0.1
57,802 + -1.0
57,803 - +1.0
57,803 - -0.2
57,818 + -0.8
57,819 - +0.7
57,930 - CA264_00235 0.42 -1.4
57,986 + CA264_00235 0.60 +0.3
57,987 - CA264_00235 0.60 -0.4
57,987 - CA264_00235 0.60 +0.8
58,029 + CA264_00235 0.74 -0.5
58,029 + CA264_00235 0.74 +0.8
58,030 - CA264_00235 0.74 +1.0
58,030 - CA264_00235 0.74 -0.0
58,064 - CA264_00235 0.85 +1.4
58,099 - -1.4
58,264 + CA264_00240 0.31 +1.0
58,321 - CA264_00240 0.41 -0.1
58,365 - CA264_00240 0.48 -1.2
58,485 + CA264_00240 0.69 -0.7
58,493 + CA264_00240 0.70 -0.2
58,522 - CA264_00240 0.75 +0.0
58,588 + CA264_00240 0.86 -0.0
58,635 + +0.7
58,663 + +0.2
58,664 - +0.0
58,782 + CA264_00245 0.13 -2.2
58,971 + CA264_00245 0.33 -1.0
59,002 + CA264_00245 0.37 +0.3
59,002 + CA264_00245 0.37 -0.3
59,134 - CA264_00245 0.51 -0.3
59,226 + CA264_00245 0.62 -0.4
59,313 - CA264_00245 0.71 -1.0
59,447 + CA264_00245 0.86 +0.0
59,448 - CA264_00245 0.86 -0.4
59,513 + -1.8
59,513 + +0.2
59,513 + +0.4
59,548 + +0.5
59,560 + +1.3
59,561 - -0.4
59,561 - -0.3
59,585 - -0.2
59,600 - +0.0
59,600 - -2.1
59,601 + +1.9
59,684 + +0.0
59,728 - -0.6
59,728 - +0.9
59,749 + +1.2
59,751 + +0.5
59,752 - -0.7
59,769 - -0.5
59,772 - -0.2
59,772 - +0.5
59,808 + -0.4
59,809 - -0.7
59,815 - -0.5
59,958 - -0.2
59,970 + +1.6
59,970 + -0.0
59,970 + -0.5
59,970 + -0.1
59,971 - +0.5
59,971 - -0.3
59,971 - -2.1
59,971 - +0.3
59,971 - -0.5
59,971 - +1.5
60,018 + CA264_00250 0.11 -0.6
60,019 - CA264_00250 0.11 -0.2
60,022 + CA264_00250 0.11 +0.4
60,022 + CA264_00250 0.11 +0.0
60,022 + CA264_00250 0.11 +1.0
60,022 + CA264_00250 0.11 -0.5
60,023 - CA264_00250 0.11 +0.0
60,068 + CA264_00250 0.13 -0.1
60,068 + CA264_00250 0.13 -1.0
60,068 + CA264_00250 0.13 -0.1
60,222 - CA264_00250 0.19 -2.8
60,227 - CA264_00250 0.19 -0.3
60,227 - CA264_00250 0.19 -0.5
60,236 - CA264_00250 0.19 -0.3
60,293 - CA264_00250 0.21 -0.3
60,341 + CA264_00250 0.23 -0.2
60,362 + CA264_00250 0.24 -0.1
60,363 - CA264_00250 0.24 -0.5
60,383 + CA264_00250 0.25 +0.5
60,384 - CA264_00250 0.25 +1.2

Or see this region's nucleotide sequence