Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28835 and ABID97_RS28840 overlap by 4 nucleotides ABID97_RS28840 and ABID97_RS28845 are separated by 38 nucleotides ABID97_RS28845 and ABID97_RS28850 are separated by 137 nucleotides
ABID97_RS28835: ABID97_RS28835 - cytochrome c family protein, at 684,358 to 684,753
_RS28835
ABID97_RS28840: ABID97_RS28840 - ferritin-like domain-containing protein, at 684,750 to 685,319
_RS28840
ABID97_RS28845: ABID97_RS28845 - RNA polymerase sigma factor, at 685,358 to 686,065
_RS28845
ABID97_RS28850: ABID97_RS28850 - chloride channel protein, at 686,203 to 687,960
_RS28850
Position (kb) 685
686
687 Strain fitness (log2 ratio) -1
0
1 at 684.456 kb on - strand, within ABID97_RS28835 at 684.456 kb on - strand, within ABID97_RS28835 at 684.557 kb on + strand, within ABID97_RS28835 at 684.558 kb on - strand, within ABID97_RS28835 at 684.659 kb on + strand, within ABID97_RS28835 at 684.660 kb on - strand, within ABID97_RS28835 at 684.890 kb on - strand, within ABID97_RS28840 at 685.121 kb on - strand, within ABID97_RS28840 at 685.323 kb on + strand at 685.324 kb on - strand at 685.324 kb on - strand at 685.863 kb on + strand, within ABID97_RS28845 at 685.863 kb on + strand, within ABID97_RS28845 at 686.160 kb on + strand at 686.465 kb on - strand, within ABID97_RS28850 at 686.977 kb on + strand, within ABID97_RS28850 at 686.977 kb on + strand, within ABID97_RS28850 at 687.065 kb on - strand, within ABID97_RS28850
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 684,456 - ABID97_RS28835 0.25 +0.4 684,456 - ABID97_RS28835 0.25 -0.2 684,557 + ABID97_RS28835 0.50 +0.8 684,558 - ABID97_RS28835 0.51 +0.3 684,659 + ABID97_RS28835 0.76 -0.0 684,660 - ABID97_RS28835 0.76 +0.0 684,890 - ABID97_RS28840 0.25 -1.1 685,121 - ABID97_RS28840 0.65 -1.0 685,323 + -0.3 685,324 - +0.2 685,324 - -0.1 685,863 + ABID97_RS28845 0.71 -1.0 685,863 + ABID97_RS28845 0.71 -1.2 686,160 + -0.9 686,465 - ABID97_RS28850 0.15 +0.1 686,977 + ABID97_RS28850 0.44 +0.4 686,977 + ABID97_RS28850 0.44 -0.1 687,065 - ABID97_RS28850 0.49 +0.5
Or see this region's nucleotide sequence