Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28335

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28325 and ABID97_RS28330 are separated by 385 nucleotidesABID97_RS28330 and ABID97_RS28335 overlap by 4 nucleotidesABID97_RS28335 and ABID97_RS28340 are separated by 29 nucleotides ABID97_RS28325: ABID97_RS28325 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 584,067 to 586,448 _RS28325 ABID97_RS28330: ABID97_RS28330 - non-heme iron oxygenase ferredoxin subunit, at 586,834 to 587,151 _RS28330 ABID97_RS28335: ABID97_RS28335 - FAD-dependent oxidoreductase, at 587,148 to 588,401 _RS28335 ABID97_RS28340: ABID97_RS28340 - Rieske 2Fe-2S domain-containing protein, at 588,431 to 589,741 _RS28340 Position (kb) 587 588 589Strain fitness (log2 ratio) -1 0 1at 586.171 kb on + strand, within ABID97_RS28325at 586.171 kb on + strand, within ABID97_RS28325at 586.588 kb on - strandat 588.178 kb on - strand, within ABID97_RS28335at 588.399 kb on + strandat 588.435 kb on - strandat 588.558 kb on - strandat 588.558 kb on - strandat 588.767 kb on - strand, within ABID97_RS28340

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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586,171 + ABID97_RS28325 0.88 +0.1
586,171 + ABID97_RS28325 0.88 -0.3
586,588 - -1.1
588,178 - ABID97_RS28335 0.82 +0.3
588,399 + +0.2
588,435 - -0.3
588,558 - +0.3
588,558 - -0.4
588,767 - ABID97_RS28340 0.26 -1.6

Or see this region's nucleotide sequence