Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27720

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27710 and ABID97_RS27715 are separated by 226 nucleotidesABID97_RS27715 and ABID97_RS27720 overlap by 4 nucleotidesABID97_RS27720 and ABID97_RS27725 are separated by 32 nucleotidesABID97_RS27725 and ABID97_RS27730 are separated by 35 nucleotides ABID97_RS27710: ABID97_RS27710 - Fe-Mn family superoxide dismutase, at 461,921 to 462,847 _RS27710 ABID97_RS27715: ABID97_RS27715 - GntR family transcriptional regulator, at 463,074 to 463,847 _RS27715 ABID97_RS27720: ABID97_RS27720 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 463,844 to 465,580 _RS27720 ABID97_RS27725: ABID97_RS27725 - ferredoxin family protein, at 465,613 to 465,846 _RS27725 ABID97_RS27730: ABID97_RS27730 - ABC transporter substrate-binding protein, at 465,882 to 467,306 _RS27730 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -2 -1 0 1at 463.126 kb on - strandat 463.174 kb on - strand, within ABID97_RS27715at 463.174 kb on - strand, within ABID97_RS27715at 463.534 kb on - strand, within ABID97_RS27715at 464.126 kb on + strand, within ABID97_RS27720at 464.223 kb on - strand, within ABID97_RS27720at 464.990 kb on + strand, within ABID97_RS27720at 466.083 kb on + strand, within ABID97_RS27730

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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463,126 - -0.2
463,174 - ABID97_RS27715 0.13 +0.3
463,174 - ABID97_RS27715 0.13 +0.8
463,534 - ABID97_RS27715 0.59 +0.7
464,126 + ABID97_RS27720 0.16 +0.9
464,223 - ABID97_RS27720 0.22 -0.4
464,990 + ABID97_RS27720 0.66 -0.5
466,083 + ABID97_RS27730 0.14 -2.0

Or see this region's nucleotide sequence