Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27500

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27495 and ABID97_RS27500 are separated by 65 nucleotidesABID97_RS27500 and ABID97_RS27505 are separated by 202 nucleotides ABID97_RS27495: ABID97_RS27495 - tripartite tricarboxylate transporter substrate binding protein, at 415,059 to 416,042 _RS27495 ABID97_RS27500: ABID97_RS27500 - AMP-binding protein, at 416,108 to 417,685 _RS27500 ABID97_RS27505: ABID97_RS27505 - IclR family transcriptional regulator, at 417,888 to 418,712 _RS27505 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1at 415.274 kb on - strand, within ABID97_RS27495at 415.565 kb on - strand, within ABID97_RS27495at 416.251 kb on - strandat 416.251 kb on - strandat 416.673 kb on + strand, within ABID97_RS27500at 417.576 kb on + strandat 417.577 kb on - strandat 417.577 kb on - strandat 417.577 kb on - strandat 418.442 kb on + strand, within ABID97_RS27505at 418.447 kb on + strand, within ABID97_RS27505at 418.448 kb on - strand, within ABID97_RS27505

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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415,274 - ABID97_RS27495 0.22 -0.3
415,565 - ABID97_RS27495 0.51 -0.7
416,251 - -0.0
416,251 - -0.5
416,673 + ABID97_RS27500 0.36 -1.1
417,576 + +0.2
417,577 - -0.4
417,577 - -0.0
417,577 - +0.7
418,442 + ABID97_RS27505 0.67 +0.4
418,447 + ABID97_RS27505 0.68 -0.2
418,448 - ABID97_RS27505 0.68 -2.0

Or see this region's nucleotide sequence