Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27430 and ABID97_RS27435 are separated by 98 nucleotides ABID97_RS27435 and ABID97_RS27440 overlap by 4 nucleotides ABID97_RS27440 and ABID97_RS27445 overlap by 4 nucleotides
ABID97_RS27430: ABID97_RS27430 - acetate--CoA ligase, at 402,854 to 404,776
_RS27430
ABID97_RS27435: ABID97_RS27435 - acyltransferase domain-containing protein, at 404,875 to 405,783
_RS27435
ABID97_RS27440: ABID97_RS27440 - triphosphoribosyl-dephospho-CoA synthase, at 405,780 to 406,643
_RS27440
ABID97_RS27445: ABID97_RS27445 - malonate decarboxylase holo-[acyl-carrier-protein] synthase, at 406,640 to 407,320
_RS27445
Position (kb) 404
405
406 Strain fitness (log2 ratio) -1
0
1 at 403.875 kb on + strand, within ABID97_RS27430 at 403.876 kb on - strand, within ABID97_RS27430 at 403.876 kb on - strand, within ABID97_RS27430 at 403.876 kb on - strand, within ABID97_RS27430 at 403.876 kb on - strand, within ABID97_RS27430 at 403.876 kb on - strand, within ABID97_RS27430 at 404.407 kb on - strand, within ABID97_RS27430 at 404.407 kb on - strand, within ABID97_RS27430 at 404.491 kb on - strand, within ABID97_RS27430 at 404.743 kb on - strand at 406.052 kb on + strand, within ABID97_RS27440 at 406.053 kb on - strand, within ABID97_RS27440 at 406.447 kb on + strand, within ABID97_RS27440 at 406.561 kb on + strand at 406.561 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 403,875 + ABID97_RS27430 0.53 -0.5 403,876 - ABID97_RS27430 0.53 -1.5 403,876 - ABID97_RS27430 0.53 +0.9 403,876 - ABID97_RS27430 0.53 -0.2 403,876 - ABID97_RS27430 0.53 -1.2 403,876 - ABID97_RS27430 0.53 +0.1 404,407 - ABID97_RS27430 0.81 -0.8 404,407 - ABID97_RS27430 0.81 -0.3 404,491 - ABID97_RS27430 0.85 -0.4 404,743 - +0.2 406,052 + ABID97_RS27440 0.31 -1.0 406,053 - ABID97_RS27440 0.32 -0.1 406,447 + ABID97_RS27440 0.77 -0.5 406,561 + +0.6 406,561 + +0.5
Or see this region's nucleotide sequence