Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27185 and ABID97_RS27190 are separated by 20 nucleotides ABID97_RS27190 and ABID97_RS27195 are separated by 71 nucleotides ABID97_RS27195 and ABID97_RS27200 are separated by 137 nucleotides ABID97_RS27200 and ABID97_RS27205 are separated by 104 nucleotides ABID97_RS27205 and ABID97_RS27210 are separated by 16 nucleotides
ABID97_RS27185: ABID97_RS27185 - GNAT family N-acetyltransferase, at 356,881 to 357,432
_RS27185
ABID97_RS27190: ABID97_RS27190 - DUF695 domain-containing protein, at 357,453 to 357,884
_RS27190
ABID97_RS27195: ABID97_RS27195 - hypothetical protein, at 357,956 to 358,183
_RS27195
ABID97_RS27200: ABID97_RS27200 - hypothetical protein, at 358,321 to 358,632
_RS27200
ABID97_RS27205: ABID97_RS27205 - hypothetical protein, at 358,737 to 358,961
_RS27205
ABID97_RS27210: ABID97_RS27210 - hypothetical protein, at 358,978 to 359,247
_RS27210
Position (kb) 357
358
359 Strain fitness (log2 ratio) -1
0
1 at 357.741 kb on + strand, within ABID97_RS27190 at 358.128 kb on - strand, within ABID97_RS27195 at 358.223 kb on - strand at 358.225 kb on - strand at 358.268 kb on - strand at 358.472 kb on + strand, within ABID97_RS27200 at 358.528 kb on + strand, within ABID97_RS27200 at 358.529 kb on - strand, within ABID97_RS27200 at 358.946 kb on - strand at 358.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 357,741 + ABID97_RS27190 0.67 -0.6 358,128 - ABID97_RS27195 0.75 -1.3 358,223 - -0.3 358,225 - -0.2 358,268 - -0.8 358,472 + ABID97_RS27200 0.48 -0.5 358,528 + ABID97_RS27200 0.66 -0.7 358,529 - ABID97_RS27200 0.67 +0.2 358,946 - +0.0 358,954 - -0.4
Or see this region's nucleotide sequence