Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27190

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27175 and ABID97_RS27180 overlap by 36 nucleotidesABID97_RS27180 and ABID97_RS27185 are separated by 91 nucleotidesABID97_RS27185 and ABID97_RS27190 are separated by 20 nucleotidesABID97_RS27190 and ABID97_RS27195 are separated by 71 nucleotidesABID97_RS27195 and ABID97_RS27200 are separated by 137 nucleotidesABID97_RS27200 and ABID97_RS27205 are separated by 104 nucleotides ABID97_RS27175: ABID97_RS27175 - DUF2625 domain-containing protein, at 355,896 to 356,540 _RS27175 ABID97_RS27180: ABID97_RS27180 - hypothetical protein, at 356,505 to 356,789 _RS27180 ABID97_RS27185: ABID97_RS27185 - GNAT family N-acetyltransferase, at 356,881 to 357,432 _RS27185 ABID97_RS27190: ABID97_RS27190 - DUF695 domain-containing protein, at 357,453 to 357,884 _RS27190 ABID97_RS27195: ABID97_RS27195 - hypothetical protein, at 357,956 to 358,183 _RS27195 ABID97_RS27200: ABID97_RS27200 - hypothetical protein, at 358,321 to 358,632 _RS27200 ABID97_RS27205: ABID97_RS27205 - hypothetical protein, at 358,737 to 358,961 _RS27205 Position (kb) 357 358Strain fitness (log2 ratio) -1 0 1at 357.741 kb on + strand, within ABID97_RS27190at 358.128 kb on - strand, within ABID97_RS27195at 358.223 kb on - strandat 358.225 kb on - strandat 358.268 kb on - strandat 358.472 kb on + strand, within ABID97_RS27200at 358.528 kb on + strand, within ABID97_RS27200at 358.529 kb on - strand, within ABID97_RS27200

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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357,741 + ABID97_RS27190 0.67 -0.6
358,128 - ABID97_RS27195 0.75 -1.3
358,223 - -0.3
358,225 - -0.2
358,268 - -0.8
358,472 + ABID97_RS27200 0.48 -0.5
358,528 + ABID97_RS27200 0.66 -0.7
358,529 - ABID97_RS27200 0.67 +0.2

Or see this region's nucleotide sequence