Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27015 and ABID97_RS27020 are separated by 77 nucleotides ABID97_RS27020 and ABID97_RS27025 are separated by 88 nucleotides ABID97_RS27025 and ABID97_RS27030 are separated by 34 nucleotides
ABID97_RS27015: ABID97_RS27015 - DoxX family protein, at 322,239 to 322,724
_RS27015
ABID97_RS27020: ABID97_RS27020 - helix-turn-helix transcriptional regulator, at 322,802 to 323,608
_RS27020
ABID97_RS27025: ABID97_RS27025 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 323,697 to 324,722
_RS27025
ABID97_RS27030: ABID97_RS27030 - tripartite tricarboxylate transporter substrate binding protein, at 324,757 to 325,734
_RS27030
Position (kb) 323
324
325 Strain fitness (log2 ratio) -1
0
1
2 at 322.789 kb on + strand at 322.790 kb on - strand at 322.790 kb on - strand at 322.946 kb on + strand, within ABID97_RS27020 at 323.046 kb on - strand, within ABID97_RS27020 at 323.607 kb on - strand at 323.670 kb on - strand at 323.719 kb on - strand at 324.121 kb on - strand, within ABID97_RS27025 at 324.133 kb on - strand, within ABID97_RS27025 at 324.340 kb on - strand, within ABID97_RS27025 at 324.348 kb on + strand, within ABID97_RS27025 at 324.486 kb on + strand, within ABID97_RS27025 at 325.066 kb on + strand, within ABID97_RS27030 at 325.220 kb on - strand, within ABID97_RS27030
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 322,789 + +0.2 322,790 - +0.1 322,790 - -1.1 322,946 + ABID97_RS27020 0.18 -1.1 323,046 - ABID97_RS27020 0.30 -0.7 323,607 - -0.3 323,670 - -0.4 323,719 - -0.2 324,121 - ABID97_RS27025 0.41 -0.3 324,133 - ABID97_RS27025 0.42 +0.1 324,340 - ABID97_RS27025 0.63 +2.5 324,348 + ABID97_RS27025 0.63 -0.2 324,486 + ABID97_RS27025 0.77 -0.2 325,066 + ABID97_RS27030 0.32 +0.2 325,220 - ABID97_RS27030 0.47 +0.2
Or see this region's nucleotide sequence