Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26990

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26985 and ABID97_RS26990 are separated by 13 nucleotidesABID97_RS26990 and ABID97_RS26995 are separated by 214 nucleotides ABID97_RS26985: ABID97_RS26985 - tripartite tricarboxylate transporter substrate binding protein BugD, at 317,582 to 318,559 _RS26985 ABID97_RS26990: ABID97_RS26990 - ornithine carbamoyltransferase, at 318,573 to 319,073 _RS26990 ABID97_RS26995: ABID97_RS26995 - Crp/Fnr family transcriptional regulator, at 319,288 to 320,076 _RS26995 Position (kb) 318 319 320Strain fitness (log2 ratio) -1 0 1at 317.834 kb on + strand, within ABID97_RS26985at 317.883 kb on - strand, within ABID97_RS26985at 318.122 kb on + strand, within ABID97_RS26985at 318.342 kb on - strand, within ABID97_RS26985at 318.342 kb on - strand, within ABID97_RS26985at 318.772 kb on + strand, within ABID97_RS26990at 319.238 kb on + strandat 319.504 kb on + strand, within ABID97_RS26995at 319.505 kb on - strand, within ABID97_RS26995at 319.676 kb on - strand, within ABID97_RS26995at 319.906 kb on + strand, within ABID97_RS26995at 319.907 kb on - strand, within ABID97_RS26995at 319.907 kb on - strand, within ABID97_RS26995

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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317,834 + ABID97_RS26985 0.26 +0.6
317,883 - ABID97_RS26985 0.31 -1.1
318,122 + ABID97_RS26985 0.55 +0.2
318,342 - ABID97_RS26985 0.78 +0.0
318,342 - ABID97_RS26985 0.78 +0.1
318,772 + ABID97_RS26990 0.40 -1.1
319,238 + +1.0
319,504 + ABID97_RS26995 0.27 +1.4
319,505 - ABID97_RS26995 0.28 +1.6
319,676 - ABID97_RS26995 0.49 +0.2
319,906 + ABID97_RS26995 0.78 -0.0
319,907 - ABID97_RS26995 0.78 +0.1
319,907 - ABID97_RS26995 0.78 -0.6

Or see this region's nucleotide sequence