Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25905

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25900 and ABID97_RS25905 are separated by 40 nucleotidesABID97_RS25905 and ABID97_RS25910 are separated by 80 nucleotides ABID97_RS25900: ABID97_RS25900 - ABC transporter permease, at 102,303 to 103,259 _RS25900 ABID97_RS25905: ABID97_RS25905 - ABC transporter substrate-binding protein, at 103,300 to 104,922 _RS25905 ABID97_RS25910: ABID97_RS25910 - FAD-binding oxidoreductase, at 105,003 to 106,295 _RS25910 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1at 102.461 kb on - strand, within ABID97_RS25900at 103.464 kb on - strand, within ABID97_RS25905at 104.258 kb on + strand, within ABID97_RS25905at 105.272 kb on - strand, within ABID97_RS25910at 105.422 kb on - strand, within ABID97_RS25910at 105.449 kb on - strand, within ABID97_RS25910at 105.772 kb on + strand, within ABID97_RS25910

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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102,461 - ABID97_RS25900 0.17 -0.6
103,464 - ABID97_RS25905 0.10 -1.5
104,258 + ABID97_RS25905 0.59 -0.6
105,272 - ABID97_RS25910 0.21 +0.0
105,422 - ABID97_RS25910 0.32 +0.7
105,449 - ABID97_RS25910 0.34 +0.4
105,772 + ABID97_RS25910 0.59 -1.8

Or see this region's nucleotide sequence