Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25405

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
5,262,962	-		ABID97_RS25390	0.87	-0.0
5,262,972	-		ABID97_RS25390	0.88	+1.0
5,262,980	-		ABID97_RS25390	0.88	+0.3
5,263,047	-				+0.2
5,263,059	-				-0.2
5,263,131	-				+0.6
5,263,131	-				+1.0
5,263,171	-				+2.1
5,263,171	-				-0.8
5,263,175	-				+0.1
5,263,175	-				+0.2
5,263,175	-				-0.4
5,263,175	-				-0.3
5,263,175	-				-0.8
5,263,175	-				+0.9
5,263,175	-				+1.2
5,263,175	-				+1.0
5,263,175	-				-0.1
5,263,175	-				+0.4
5,263,234	-				-0.3
5,263,257	-				-0.1
5,263,267	-				+0.4
5,263,331	-				+0.5
5,263,333	-				-0.1
5,263,377	-				+0.7
5,263,377	-				+0.5
5,263,403	-				-0.8
5,263,496	-				+2.1
5,263,644	-				-0.1
5,263,652	-				-0.1
5,263,652	-				+0.2
5,263,722	-				+0.4
5,263,722	-				-0.8
5,263,769	-		ABID97_RS25400	0.13	+0.1
5,263,769	-		ABID97_RS25400	0.13	+0.2
5,263,769	-		ABID97_RS25400	0.13	+1.1
5,263,769	-		ABID97_RS25400	0.13	-0.3
5,263,799	-		ABID97_RS25400	0.52	-0.2
5,263,799	-		ABID97_RS25400	0.52	-0.4
5,263,815	-		ABID97_RS25400	0.73	-0.7
5,263,828	-				+0.1
5,263,828	-				-0.4
5,263,879	-				-0.3
5,263,898	-				-1.9
5,264,017	-				-1.3
5,264,017	-				+0.4
5,264,017	-				+1.0
5,264,021	-				-1.1
5,264,064	-				-0.3
5,264,064	-				+1.7
5,264,064	-				+0.7
5,264,081	-		ABID97_RS25405	0.11	-0.9
5,264,081	-		ABID97_RS25405	0.11	-1.4
5,264,081	-		ABID97_RS25405	0.11	+2.0
5,264,081	-		ABID97_RS25405	0.11	-0.8
5,264,081	-		ABID97_RS25405	0.11	-0.0
5,264,109	-		ABID97_RS25405	0.13	-0.1
5,264,112	-		ABID97_RS25405	0.13	-1.0
5,264,159	-		ABID97_RS25405	0.16	+0.2
5,264,171	-		ABID97_RS25405	0.17	+0.5
5,264,179	-		ABID97_RS25405	0.17	-0.4
5,264,179	-		ABID97_RS25405	0.17	-0.8
5,264,179	-		ABID97_RS25405	0.17	-0.1
5,264,179	-		ABID97_RS25405	0.17	-1.4
5,264,179	-		ABID97_RS25405	0.17	+0.4
5,264,179	-		ABID97_RS25405	0.17	-0.9
5,264,179	-		ABID97_RS25405	0.17	-0.4
5,264,179	-		ABID97_RS25405	0.17	+0.6
5,264,222	-		ABID97_RS25405	0.20	-0.5
5,264,222	-		ABID97_RS25405	0.20	-2.2
5,264,222	-		ABID97_RS25405	0.20	-2.4
5,264,222	-		ABID97_RS25405	0.20	+0.4
5,264,222	-		ABID97_RS25405	0.20	-0.6
5,264,243	-		ABID97_RS25405	0.21	-0.3
5,264,243	-		ABID97_RS25405	0.21	+0.2
5,264,243	-		ABID97_RS25405	0.21	+1.1
5,264,243	-		ABID97_RS25405	0.21	-0.4
5,264,243	-		ABID97_RS25405	0.21	-0.2
5,264,243	-		ABID97_RS25405	0.21	+1.0
5,264,243	-		ABID97_RS25405	0.21	+1.2
5,264,307	-		ABID97_RS25405	0.26	+0.2
5,264,307	-		ABID97_RS25405	0.26	+0.6
5,264,326	-		ABID97_RS25405	0.27	+0.7
5,264,326	-		ABID97_RS25405	0.27	+1.1
5,264,326	-		ABID97_RS25405	0.27	+0.7
5,264,326	-		ABID97_RS25405	0.27	-0.1
5,264,326	-		ABID97_RS25405	0.27	+0.2
5,264,326	-		ABID97_RS25405	0.27	-0.6
5,264,326	-		ABID97_RS25405	0.27	+0.6
5,264,333	-		ABID97_RS25405	0.27	+0.3
5,264,333	-		ABID97_RS25405	0.27	-1.7
5,264,333	-		ABID97_RS25405	0.27	-1.3
5,264,364	-		ABID97_RS25405	0.29	-1.5
5,264,364	-		ABID97_RS25405	0.29	-0.1
5,264,435	-		ABID97_RS25405	0.34	-0.8
5,264,458	-		ABID97_RS25405	0.35	+0.6
5,264,458	-		ABID97_RS25405	0.35	-0.8
5,264,458	-		ABID97_RS25405	0.35	-1.8
5,264,458	-		ABID97_RS25405	0.35	-1.4
5,264,566	-		ABID97_RS25405	0.42	-1.6
5,264,667	-		ABID97_RS25405	0.49	-0.8
5,264,667	-		ABID97_RS25405	0.49	-1.7
5,264,667	-		ABID97_RS25405	0.49	-0.8
5,264,667	-		ABID97_RS25405	0.49	-0.4
5,264,667	-		ABID97_RS25405	0.49	-1.0
5,264,667	-		ABID97_RS25405	0.49	-0.3
5,264,667	-		ABID97_RS25405	0.49	+1.1
5,264,667	-		ABID97_RS25405	0.49	-0.4
5,264,667	-		ABID97_RS25405	0.49	+1.2
5,264,708	-		ABID97_RS25405	0.52	+1.6
5,264,708	-		ABID97_RS25405	0.52	-1.1
5,264,708	-		ABID97_RS25405	0.52	-0.8
5,264,751	-		ABID97_RS25405	0.54	-0.8
5,264,751	-		ABID97_RS25405	0.54	+0.7
5,264,751	-		ABID97_RS25405	0.54	-0.9
5,264,755	-		ABID97_RS25405	0.55	+1.0
5,264,755	-		ABID97_RS25405	0.55	-0.0
5,264,770	-		ABID97_RS25405	0.56	-0.6
5,264,862	-		ABID97_RS25405	0.62	-2.2
5,264,862	-		ABID97_RS25405	0.62	-0.7
5,264,944	-		ABID97_RS25405	0.67	+0.1
5,264,979	-		ABID97_RS25405	0.69	-1.6
5,265,027	-		ABID97_RS25405	0.72	-0.4
5,265,113	-		ABID97_RS25405	0.78	+0.1
5,265,169	-		ABID97_RS25405	0.82	-1.3
5,265,169	-		ABID97_RS25405	0.82	+1.4
5,265,169	-		ABID97_RS25405	0.82	+0.6
5,265,169	-		ABID97_RS25405	0.82	-1.4
5,265,169	-		ABID97_RS25405	0.82	-0.2
5,265,195	-		ABID97_RS25405	0.83	+1.2
5,265,207	-		ABID97_RS25405	0.84	-0.3
5,265,207	-		ABID97_RS25405	0.84	-0.9
5,265,211	-		ABID97_RS25405	0.84	-1.0
5,265,211	-		ABID97_RS25405	0.84	+0.7
5,265,211	-		ABID97_RS25405	0.84	-1.4
5,265,211	-		ABID97_RS25405	0.84	+0.1
5,265,211	-		ABID97_RS25405	0.84	+2.0
5,265,211	-		ABID97_RS25405	0.84	-0.7
5,265,211	-		ABID97_RS25405	0.84	+0.2
5,265,269	-		ABID97_RS25405	0.88	-0.5
5,265,269	-		ABID97_RS25405	0.88	-0.0
5,265,276	-		ABID97_RS25405	0.89	-2.4
5,265,286	-		ABID97_RS25405	0.89	-1.1
5,265,286	-		ABID97_RS25405	0.89	+1.0
5,265,335	-				-0.8
5,265,335	-				-0.3
5,265,335	-				-0.2
5,265,335	-				+1.3
5,265,335	-				+0.7
5,265,335	-				-0.7
5,265,335	-				-0.6
5,265,335	-				-2.6
5,265,400	-				-0.3
5,265,400	-				-0.1
5,265,400	-				+0.3
5,265,443	-				+0.2
5,265,445	-				-2.2
5,265,445	-				-1.4
5,265,445	-				-1.8
5,265,445	-				-1.2
5,265,445	-				+0.0
5,265,524	-				-0.3
5,265,569	-				-0.1
5,265,569	-				-1.2
5,265,577	-				+0.6
5,265,606	-				-0.6
5,265,606	-				-0.7
5,265,678	-				-0.4
5,265,678	-				-0.5
5,265,683	-				-0.6
5,265,683	-				-0.6
5,265,699	+				+0.6
5,265,700	-				-0.6
5,265,793	-				+0.1