Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25115 and ABID97_RS25120 overlap by 8 nucleotides ABID97_RS25120 and ABID97_RS25125 are separated by 9 nucleotides ABID97_RS25125 and ABID97_RS25130 are separated by 14 nucleotides
ABID97_RS25115: ABID97_RS25115 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 5,201,517 to 5,203,517
_RS25115
ABID97_RS25120: ABID97_RS25120 - DUF4126 domain-containing protein, at 5,203,510 to 5,204,181
_RS25120
ABID97_RS25125: ABID97_RS25125 - enoyl-CoA hydratase/isomerase family protein, at 5,204,191 to 5,204,982
_RS25125
ABID97_RS25130: ABID97_RS25130 - carboxyl transferase domain-containing protein, at 5,204,997 to 5,206,622
_RS25130
Position (kb) 5204
5205 Strain fitness (log2 ratio) -2
-1
0
1 at 5203.273 kb on + strand, within ABID97_RS25115 at 5203.339 kb on + strand at 5203.339 kb on + strand at 5203.340 kb on - strand at 5203.511 kb on + strand at 5203.922 kb on - strand, within ABID97_RS25120 at 5204.109 kb on - strand, within ABID97_RS25120 at 5204.109 kb on - strand, within ABID97_RS25120 at 5204.495 kb on + strand, within ABID97_RS25125 at 5204.496 kb on - strand, within ABID97_RS25125 at 5204.496 kb on - strand, within ABID97_RS25125 at 5204.534 kb on + strand, within ABID97_RS25125 at 5204.535 kb on - strand, within ABID97_RS25125 at 5204.585 kb on + strand, within ABID97_RS25125 at 5204.585 kb on + strand, within ABID97_RS25125 at 5204.586 kb on - strand, within ABID97_RS25125 at 5204.648 kb on + strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.649 kb on - strand, within ABID97_RS25125 at 5204.753 kb on + strand, within ABID97_RS25125 at 5205.127 kb on + strand at 5205.127 kb on + strand at 5205.130 kb on + strand at 5205.340 kb on + strand, within ABID97_RS25130 at 5205.340 kb on + strand, within ABID97_RS25130 at 5205.340 kb on + strand, within ABID97_RS25130 at 5205.451 kb on + strand, within ABID97_RS25130 at 5205.737 kb on - strand, within ABID97_RS25130
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,203,273 + ABID97_RS25115 0.88 -2.2 5,203,339 + -2.0 5,203,339 + -1.0 5,203,340 - -1.8 5,203,511 + -2.0 5,203,922 - ABID97_RS25120 0.61 +0.2 5,204,109 - ABID97_RS25120 0.89 +0.1 5,204,109 - ABID97_RS25120 0.89 -0.7 5,204,495 + ABID97_RS25125 0.38 -0.8 5,204,496 - ABID97_RS25125 0.39 -1.3 5,204,496 - ABID97_RS25125 0.39 -0.6 5,204,534 + ABID97_RS25125 0.43 -1.0 5,204,535 - ABID97_RS25125 0.43 -1.2 5,204,585 + ABID97_RS25125 0.50 -1.4 5,204,585 + ABID97_RS25125 0.50 -1.4 5,204,586 - ABID97_RS25125 0.50 -0.8 5,204,648 + ABID97_RS25125 0.58 -1.9 5,204,649 - ABID97_RS25125 0.58 -1.5 5,204,649 - ABID97_RS25125 0.58 -0.8 5,204,649 - ABID97_RS25125 0.58 -2.7 5,204,649 - ABID97_RS25125 0.58 -1.9 5,204,753 + ABID97_RS25125 0.71 -1.2 5,205,127 + -0.1 5,205,127 + -0.8 5,205,130 + +0.1 5,205,340 + ABID97_RS25130 0.21 -1.5 5,205,340 + ABID97_RS25130 0.21 -1.7 5,205,340 + ABID97_RS25130 0.21 -0.5 5,205,451 + ABID97_RS25130 0.28 -1.2 5,205,737 - ABID97_RS25130 0.46 -1.3
Or see this region's nucleotide sequence