Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25005 and ABID97_RS25010 are separated by 19 nucleotides ABID97_RS25010 and ABID97_RS25015 are separated by 89 nucleotides ABID97_RS25015 and ABID97_RS25020 are separated by 10 nucleotides ABID97_RS25020 and ABID97_RS25025 are separated by 0 nucleotides
ABID97_RS25005: ABID97_RS25005 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 5,176,270 to 5,177,223
_RS25005
ABID97_RS25010: ABID97_RS25010 - septal ring lytic transglycosylase RlpA family protein, at 5,177,243 to 5,177,827
_RS25010
ABID97_RS25015: ABID97_RS25015 - methylenetetrahydrofolate reductase [NAD(P)H], at 5,177,917 to 5,178,741
_RS25015
ABID97_RS25020: ABID97_RS25020 - TlyA family RNA methyltransferase, at 5,178,752 to 5,179,549
_RS25020
ABID97_RS25025: ABID97_RS25025 - adenosylhomocysteinase, at 5,179,550 to 5,180,989
_RS25025
Position (kb) 5177
5178
5179 Strain fitness (log2 ratio) -2
-1
0
1 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.924 kb on + strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5176.925 kb on - strand, within ABID97_RS25005 at 5177.125 kb on + strand, within ABID97_RS25005 at 5177.125 kb on + strand, within ABID97_RS25005 at 5177.126 kb on - strand, within ABID97_RS25005 at 5177.446 kb on - strand, within ABID97_RS25010 at 5177.608 kb on - strand, within ABID97_RS25010 at 5177.608 kb on - strand, within ABID97_RS25010 at 5177.935 kb on + strand at 5177.969 kb on + strand at 5177.969 kb on + strand at 5178.221 kb on + strand, within ABID97_RS25015 at 5178.221 kb on + strand, within ABID97_RS25015 at 5178.221 kb on + strand, within ABID97_RS25015 at 5178.222 kb on - strand, within ABID97_RS25015 at 5178.407 kb on + strand, within ABID97_RS25015 at 5178.407 kb on + strand, within ABID97_RS25015 at 5178.408 kb on - strand, within ABID97_RS25015 at 5178.408 kb on - strand, within ABID97_RS25015 at 5178.623 kb on + strand, within ABID97_RS25015 at 5178.656 kb on + strand, within ABID97_RS25015 at 5178.656 kb on + strand, within ABID97_RS25015 at 5178.656 kb on + strand, within ABID97_RS25015 at 5178.657 kb on - strand, within ABID97_RS25015 at 5178.657 kb on - strand, within ABID97_RS25015 at 5178.657 kb on - strand, within ABID97_RS25015 at 5178.657 kb on - strand, within ABID97_RS25015 at 5178.657 kb on - strand, within ABID97_RS25015 at 5178.900 kb on + strand, within ABID97_RS25020 at 5178.900 kb on + strand, within ABID97_RS25020 at 5178.900 kb on + strand, within ABID97_RS25020 at 5178.900 kb on + strand, within ABID97_RS25020 at 5178.900 kb on + strand, within ABID97_RS25020 at 5178.901 kb on - strand, within ABID97_RS25020 at 5178.901 kb on - strand, within ABID97_RS25020 at 5178.901 kb on - strand, within ABID97_RS25020 at 5178.901 kb on - strand, within ABID97_RS25020 at 5179.359 kb on + strand, within ABID97_RS25020 at 5179.359 kb on + strand, within ABID97_RS25020 at 5179.359 kb on + strand, within ABID97_RS25020 at 5179.359 kb on + strand, within ABID97_RS25020 at 5179.360 kb on - strand, within ABID97_RS25020 at 5179.360 kb on - strand, within ABID97_RS25020 at 5179.360 kb on - strand, within ABID97_RS25020 at 5179.360 kb on - strand, within ABID97_RS25020 at 5179.360 kb on - strand, within ABID97_RS25020 at 5179.560 kb on + strand at 5179.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,176,924 + ABID97_RS25005 0.69 +1.0 5,176,924 + ABID97_RS25005 0.69 -0.6 5,176,924 + ABID97_RS25005 0.69 +0.2 5,176,924 + ABID97_RS25005 0.69 +0.2 5,176,924 + ABID97_RS25005 0.69 -0.2 5,176,924 + ABID97_RS25005 0.69 +0.4 5,176,924 + ABID97_RS25005 0.69 -0.1 5,176,924 + ABID97_RS25005 0.69 -1.0 5,176,924 + ABID97_RS25005 0.69 -0.1 5,176,924 + ABID97_RS25005 0.69 +0.2 5,176,925 - ABID97_RS25005 0.69 +0.0 5,176,925 - ABID97_RS25005 0.69 +0.3 5,176,925 - ABID97_RS25005 0.69 +0.1 5,176,925 - ABID97_RS25005 0.69 +0.3 5,176,925 - ABID97_RS25005 0.69 +0.0 5,176,925 - ABID97_RS25005 0.69 +1.1 5,176,925 - ABID97_RS25005 0.69 -0.6 5,177,125 + ABID97_RS25005 0.90 -0.1 5,177,125 + ABID97_RS25005 0.90 -0.4 5,177,126 - ABID97_RS25005 0.90 +0.1 5,177,446 - ABID97_RS25010 0.35 -0.4 5,177,608 - ABID97_RS25010 0.62 +0.3 5,177,608 - ABID97_RS25010 0.62 +0.1 5,177,935 + -0.5 5,177,969 + +0.4 5,177,969 + -1.7 5,178,221 + ABID97_RS25015 0.37 +0.7 5,178,221 + ABID97_RS25015 0.37 -1.3 5,178,221 + ABID97_RS25015 0.37 -1.0 5,178,222 - ABID97_RS25015 0.37 -1.7 5,178,407 + ABID97_RS25015 0.59 -0.4 5,178,407 + ABID97_RS25015 0.59 -1.2 5,178,408 - ABID97_RS25015 0.60 +1.4 5,178,408 - ABID97_RS25015 0.60 +1.7 5,178,623 + ABID97_RS25015 0.86 -0.3 5,178,656 + ABID97_RS25015 0.90 -0.9 5,178,656 + ABID97_RS25015 0.90 -0.7 5,178,656 + ABID97_RS25015 0.90 -1.7 5,178,657 - ABID97_RS25015 0.90 -1.2 5,178,657 - ABID97_RS25015 0.90 +0.4 5,178,657 - ABID97_RS25015 0.90 +1.0 5,178,657 - ABID97_RS25015 0.90 +0.9 5,178,657 - ABID97_RS25015 0.90 -0.9 5,178,900 + ABID97_RS25020 0.19 +0.1 5,178,900 + ABID97_RS25020 0.19 +1.0 5,178,900 + ABID97_RS25020 0.19 -0.7 5,178,900 + ABID97_RS25020 0.19 -0.1 5,178,900 + ABID97_RS25020 0.19 -0.2 5,178,901 - ABID97_RS25020 0.19 -0.5 5,178,901 - ABID97_RS25020 0.19 -0.1 5,178,901 - ABID97_RS25020 0.19 -0.0 5,178,901 - ABID97_RS25020 0.19 +0.5 5,179,359 + ABID97_RS25020 0.76 -0.2 5,179,359 + ABID97_RS25020 0.76 +0.5 5,179,359 + ABID97_RS25020 0.76 +0.5 5,179,359 + ABID97_RS25020 0.76 +0.2 5,179,360 - ABID97_RS25020 0.76 -0.1 5,179,360 - ABID97_RS25020 0.76 -0.4 5,179,360 - ABID97_RS25020 0.76 -0.2 5,179,360 - ABID97_RS25020 0.76 -0.4 5,179,360 - ABID97_RS25020 0.76 -0.1 5,179,560 + -0.6 5,179,561 - -2.7
Or see this region's nucleotide sequence