Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24740 and ABID97_RS24745 are separated by 13 nucleotides ABID97_RS24745 and ABID97_RS24750 are separated by 10 nucleotides ABID97_RS24750 and ABID97_RS24755 are separated by 201 nucleotides
ABID97_RS24740: ABID97_RS24740 - YqaA family protein, at 5,128,562 to 5,129,032
_RS24740
ABID97_RS24745: ABID97_RS24745 - glutathione S-transferase, at 5,129,046 to 5,129,720
_RS24745
ABID97_RS24750: ABID97_RS24750 - redox-regulated ATPase YchF, at 5,129,731 to 5,130,822
_RS24750
ABID97_RS24755: ABID97_RS24755 - sugar ABC transporter substrate-binding protein, at 5,131,024 to 5,131,980
_RS24755
Position (kb) 5129
5130
5131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5128.779 kb on + strand, within ABID97_RS24740 at 5128.780 kb on - strand, within ABID97_RS24740 at 5128.811 kb on + strand, within ABID97_RS24740 at 5128.840 kb on - strand, within ABID97_RS24740 at 5128.962 kb on - strand, within ABID97_RS24740 at 5128.962 kb on - strand, within ABID97_RS24740 at 5128.962 kb on - strand, within ABID97_RS24740 at 5128.988 kb on + strand at 5128.988 kb on + strand at 5128.988 kb on + strand at 5128.989 kb on - strand at 5129.015 kb on + strand at 5129.016 kb on - strand at 5129.092 kb on + strand at 5129.092 kb on + strand at 5129.093 kb on - strand at 5129.093 kb on - strand at 5129.630 kb on - strand, within ABID97_RS24745 at 5129.777 kb on + strand at 5129.777 kb on + strand at 5129.777 kb on + strand at 5129.778 kb on - strand at 5129.778 kb on - strand at 5129.778 kb on - strand at 5129.835 kb on - strand at 5129.843 kb on + strand, within ABID97_RS24750 at 5129.843 kb on + strand, within ABID97_RS24750 at 5129.844 kb on - strand, within ABID97_RS24750 at 5129.844 kb on - strand, within ABID97_RS24750 at 5129.844 kb on - strand, within ABID97_RS24750 at 5129.877 kb on - strand, within ABID97_RS24750 at 5129.877 kb on - strand, within ABID97_RS24750 at 5129.978 kb on + strand, within ABID97_RS24750 at 5129.978 kb on + strand, within ABID97_RS24750 at 5129.978 kb on + strand, within ABID97_RS24750 at 5129.978 kb on + strand, within ABID97_RS24750 at 5129.978 kb on + strand, within ABID97_RS24750 at 5129.979 kb on - strand, within ABID97_RS24750 at 5130.002 kb on + strand, within ABID97_RS24750 at 5130.002 kb on + strand, within ABID97_RS24750 at 5130.002 kb on + strand, within ABID97_RS24750 at 5130.002 kb on + strand, within ABID97_RS24750 at 5130.149 kb on + strand, within ABID97_RS24750 at 5130.149 kb on + strand, within ABID97_RS24750 at 5130.149 kb on + strand, within ABID97_RS24750 at 5130.150 kb on - strand, within ABID97_RS24750 at 5130.150 kb on - strand, within ABID97_RS24750 at 5130.728 kb on + strand at 5130.729 kb on - strand at 5130.923 kb on - strand at 5130.933 kb on - strand at 5130.968 kb on - strand at 5131.041 kb on + strand at 5131.210 kb on + strand, within ABID97_RS24755 at 5131.210 kb on + strand, within ABID97_RS24755 at 5131.573 kb on + strand, within ABID97_RS24755 at 5131.783 kb on + strand, within ABID97_RS24755
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,128,779 + ABID97_RS24740 0.46 -0.6 5,128,780 - ABID97_RS24740 0.46 +1.0 5,128,811 + ABID97_RS24740 0.53 +0.7 5,128,840 - ABID97_RS24740 0.59 +0.2 5,128,962 - ABID97_RS24740 0.85 -0.3 5,128,962 - ABID97_RS24740 0.85 -1.2 5,128,962 - ABID97_RS24740 0.85 -0.3 5,128,988 + -0.7 5,128,988 + -0.2 5,128,988 + -0.5 5,128,989 - +2.4 5,129,015 + -0.5 5,129,016 - -0.2 5,129,092 + -1.5 5,129,092 + +0.1 5,129,093 - -0.1 5,129,093 - +1.0 5,129,630 - ABID97_RS24745 0.87 -0.1 5,129,777 + +0.1 5,129,777 + -0.8 5,129,777 + +0.9 5,129,778 - -3.2 5,129,778 - -0.4 5,129,778 - -0.2 5,129,835 - -0.4 5,129,843 + ABID97_RS24750 0.10 -1.1 5,129,843 + ABID97_RS24750 0.10 -0.0 5,129,844 - ABID97_RS24750 0.10 -2.1 5,129,844 - ABID97_RS24750 0.10 +1.1 5,129,844 - ABID97_RS24750 0.10 -2.6 5,129,877 - ABID97_RS24750 0.13 -1.3 5,129,877 - ABID97_RS24750 0.13 -0.3 5,129,978 + ABID97_RS24750 0.23 +0.5 5,129,978 + ABID97_RS24750 0.23 +0.2 5,129,978 + ABID97_RS24750 0.23 -0.5 5,129,978 + ABID97_RS24750 0.23 -1.2 5,129,978 + ABID97_RS24750 0.23 -0.3 5,129,979 - ABID97_RS24750 0.23 -0.8 5,130,002 + ABID97_RS24750 0.25 -1.4 5,130,002 + ABID97_RS24750 0.25 -0.0 5,130,002 + ABID97_RS24750 0.25 -0.0 5,130,002 + ABID97_RS24750 0.25 -0.1 5,130,149 + ABID97_RS24750 0.38 -0.5 5,130,149 + ABID97_RS24750 0.38 +0.8 5,130,149 + ABID97_RS24750 0.38 -0.6 5,130,150 - ABID97_RS24750 0.38 +0.2 5,130,150 - ABID97_RS24750 0.38 +0.7 5,130,728 + +0.3 5,130,729 - -0.3 5,130,923 - -0.9 5,130,933 - +0.0 5,130,968 - +0.1 5,131,041 + +0.6 5,131,210 + ABID97_RS24755 0.19 +0.6 5,131,210 + ABID97_RS24755 0.19 +0.2 5,131,573 + ABID97_RS24755 0.57 +0.5 5,131,783 + ABID97_RS24755 0.79 -0.1
Or see this region's nucleotide sequence