Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24690 and ABID97_RS24695 are separated by 42 nucleotides ABID97_RS24695 and ABID97_RS24700 are separated by 19 nucleotides ABID97_RS24700 and ABID97_RS24705 overlap by 1 nucleotides ABID97_RS24705 and ABID97_RS24710 are separated by 81 nucleotides ABID97_RS24710 and ABID97_RS24715 are separated by 111 nucleotides
ABID97_RS24690: ABID97_RS24690 - methyl-accepting chemotaxis protein, at 5,119,115 to 5,121,430
_RS24690
ABID97_RS24695: ABID97_RS24695 - chemotaxis protein CheW, at 5,121,473 to 5,122,006
_RS24695
ABID97_RS24700: ABID97_RS24700 - response regulator, at 5,122,026 to 5,122,391
_RS24700
ABID97_RS24705: ABID97_RS24705 - response regulator, at 5,122,391 to 5,122,789
_RS24705
ABID97_RS24710: ABID97_RS24710 - rubredoxin, at 5,122,871 to 5,123,041
_RS24710
ABID97_RS24715: ABID97_RS24715 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,123,153 to 5,124,116
_RS24715
Position (kb) 5122
5123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5121.398 kb on + strand at 5121.398 kb on + strand at 5121.399 kb on - strand at 5121.399 kb on - strand at 5121.450 kb on + strand at 5121.451 kb on - strand at 5121.451 kb on - strand at 5121.474 kb on + strand at 5121.474 kb on + strand at 5121.488 kb on + strand at 5121.489 kb on - strand at 5121.558 kb on + strand, within ABID97_RS24695 at 5121.558 kb on + strand, within ABID97_RS24695 at 5121.558 kb on + strand, within ABID97_RS24695 at 5121.559 kb on - strand, within ABID97_RS24695 at 5121.559 kb on - strand, within ABID97_RS24695 at 5121.559 kb on - strand, within ABID97_RS24695 at 5121.559 kb on - strand, within ABID97_RS24695 at 5121.559 kb on - strand, within ABID97_RS24695 at 5121.559 kb on - strand, within ABID97_RS24695 at 5121.778 kb on - strand, within ABID97_RS24695 at 5121.825 kb on + strand, within ABID97_RS24695 at 5121.826 kb on - strand, within ABID97_RS24695 at 5121.888 kb on + strand, within ABID97_RS24695 at 5121.889 kb on - strand, within ABID97_RS24695 at 5121.889 kb on - strand, within ABID97_RS24695 at 5122.084 kb on + strand, within ABID97_RS24700 at 5122.085 kb on - strand, within ABID97_RS24700 at 5122.085 kb on - strand, within ABID97_RS24700 at 5122.168 kb on + strand, within ABID97_RS24700 at 5122.168 kb on + strand, within ABID97_RS24700 at 5122.169 kb on - strand, within ABID97_RS24700 at 5122.392 kb on + strand at 5122.393 kb on - strand at 5122.470 kb on + strand, within ABID97_RS24705 at 5122.471 kb on - strand, within ABID97_RS24705 at 5122.715 kb on + strand, within ABID97_RS24705 at 5122.738 kb on + strand, within ABID97_RS24705 at 5122.739 kb on - strand, within ABID97_RS24705 at 5122.739 kb on - strand, within ABID97_RS24705 at 5122.767 kb on + strand at 5122.767 kb on + strand at 5122.767 kb on + strand at 5122.767 kb on + strand at 5122.768 kb on - strand at 5122.768 kb on - strand at 5122.834 kb on + strand at 5122.836 kb on - strand at 5122.836 kb on - strand at 5122.836 kb on - strand at 5122.836 kb on - strand at 5122.836 kb on - strand at 5122.836 kb on - strand at 5123.066 kb on - strand at 5123.109 kb on - strand at 5123.152 kb on + strand at 5123.162 kb on + strand at 5123.163 kb on - strand at 5123.167 kb on - strand at 5123.167 kb on - strand at 5123.203 kb on + strand at 5123.204 kb on - strand at 5123.369 kb on + strand, within ABID97_RS24715 at 5123.370 kb on - strand, within ABID97_RS24715 at 5123.558 kb on + strand, within ABID97_RS24715 at 5123.558 kb on + strand, within ABID97_RS24715 at 5123.559 kb on - strand, within ABID97_RS24715 at 5123.559 kb on - strand, within ABID97_RS24715 at 5123.559 kb on - strand, within ABID97_RS24715 at 5123.559 kb on - strand, within ABID97_RS24715 at 5123.559 kb on - strand, within ABID97_RS24715 at 5123.559 kb on - strand, within ABID97_RS24715 at 5123.603 kb on + strand, within ABID97_RS24715 at 5123.603 kb on + strand, within ABID97_RS24715 at 5123.604 kb on - strand, within ABID97_RS24715 at 5123.604 kb on - strand, within ABID97_RS24715 at 5123.760 kb on - strand, within ABID97_RS24715
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,121,398 + +0.4 5,121,398 + +0.1 5,121,399 - -1.1 5,121,399 - -1.1 5,121,450 + -0.6 5,121,451 - +0.4 5,121,451 - -0.3 5,121,474 + +0.9 5,121,474 + +1.6 5,121,488 + +0.8 5,121,489 - -0.5 5,121,558 + ABID97_RS24695 0.16 +0.2 5,121,558 + ABID97_RS24695 0.16 +0.5 5,121,558 + ABID97_RS24695 0.16 +0.2 5,121,559 - ABID97_RS24695 0.16 +0.7 5,121,559 - ABID97_RS24695 0.16 -0.2 5,121,559 - ABID97_RS24695 0.16 +0.3 5,121,559 - ABID97_RS24695 0.16 +1.4 5,121,559 - ABID97_RS24695 0.16 -0.1 5,121,559 - ABID97_RS24695 0.16 +1.0 5,121,778 - ABID97_RS24695 0.57 -0.3 5,121,825 + ABID97_RS24695 0.66 +0.3 5,121,826 - ABID97_RS24695 0.66 +0.6 5,121,888 + ABID97_RS24695 0.78 +0.9 5,121,889 - ABID97_RS24695 0.78 +0.7 5,121,889 - ABID97_RS24695 0.78 +0.8 5,122,084 + ABID97_RS24700 0.16 -0.6 5,122,085 - ABID97_RS24700 0.16 -0.5 5,122,085 - ABID97_RS24700 0.16 +0.3 5,122,168 + ABID97_RS24700 0.39 -0.3 5,122,168 + ABID97_RS24700 0.39 -0.6 5,122,169 - ABID97_RS24700 0.39 +0.9 5,122,392 + +0.3 5,122,393 - +0.4 5,122,470 + ABID97_RS24705 0.20 -0.5 5,122,471 - ABID97_RS24705 0.20 -0.1 5,122,715 + ABID97_RS24705 0.81 -1.7 5,122,738 + ABID97_RS24705 0.87 -3.1 5,122,739 - ABID97_RS24705 0.87 -1.2 5,122,739 - ABID97_RS24705 0.87 -1.1 5,122,767 + -0.9 5,122,767 + -1.5 5,122,767 + -1.0 5,122,767 + -0.6 5,122,768 - -1.2 5,122,768 - -1.9 5,122,834 + -0.1 5,122,836 - -0.4 5,122,836 - -0.6 5,122,836 - -0.4 5,122,836 - -0.4 5,122,836 - -0.7 5,122,836 - -1.8 5,123,066 - -0.0 5,123,109 - -2.1 5,123,152 + -0.3 5,123,162 + +0.4 5,123,163 - +0.1 5,123,167 - +2.0 5,123,167 - -0.4 5,123,203 + -0.1 5,123,204 - +0.1 5,123,369 + ABID97_RS24715 0.22 -0.3 5,123,370 - ABID97_RS24715 0.23 +2.3 5,123,558 + ABID97_RS24715 0.42 -0.2 5,123,558 + ABID97_RS24715 0.42 +0.6 5,123,559 - ABID97_RS24715 0.42 +0.3 5,123,559 - ABID97_RS24715 0.42 +0.1 5,123,559 - ABID97_RS24715 0.42 -0.9 5,123,559 - ABID97_RS24715 0.42 -0.1 5,123,559 - ABID97_RS24715 0.42 +0.1 5,123,559 - ABID97_RS24715 0.42 +0.1 5,123,603 + ABID97_RS24715 0.47 -0.4 5,123,603 + ABID97_RS24715 0.47 -0.6 5,123,604 - ABID97_RS24715 0.47 -0.1 5,123,604 - ABID97_RS24715 0.47 -1.7 5,123,760 - ABID97_RS24715 0.63 -0.1
Or see this region's nucleotide sequence