Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24275 and ABID97_RS24280 are separated by 46 nucleotides ABID97_RS24280 and ABID97_RS24285 are separated by 35 nucleotides
ABID97_RS24275: ABID97_RS24275 - Flp pilus assembly protein CpaB, at 5,019,170 to 5,020,174
_RS24275
ABID97_RS24280: ABID97_RS24280 - type II and III secretion system protein family protein, at 5,020,221 to 5,021,591
_RS24280
ABID97_RS24285: ABID97_RS24285 - histidine kinase, at 5,021,627 to 5,022,910
_RS24285
Position (kb) 5020
5021
5022 Strain fitness (log2 ratio) -1
0
1 at 5019.698 kb on + strand, within ABID97_RS24275 at 5019.699 kb on - strand, within ABID97_RS24275 at 5020.197 kb on + strand at 5020.197 kb on + strand at 5020.197 kb on + strand at 5020.197 kb on + strand at 5020.198 kb on - strand at 5020.198 kb on - strand at 5020.581 kb on + strand, within ABID97_RS24280 at 5020.581 kb on + strand, within ABID97_RS24280 at 5020.582 kb on - strand, within ABID97_RS24280 at 5021.115 kb on + strand, within ABID97_RS24280 at 5021.116 kb on - strand, within ABID97_RS24280 at 5021.116 kb on - strand, within ABID97_RS24280 at 5021.116 kb on - strand, within ABID97_RS24280 at 5021.116 kb on - strand, within ABID97_RS24280 at 5021.116 kb on - strand, within ABID97_RS24280 at 5021.211 kb on + strand, within ABID97_RS24280 at 5021.212 kb on - strand, within ABID97_RS24280 at 5021.212 kb on - strand, within ABID97_RS24280 at 5021.212 kb on - strand, within ABID97_RS24280 at 5021.409 kb on + strand, within ABID97_RS24280 at 5021.409 kb on + strand, within ABID97_RS24280 at 5021.410 kb on - strand, within ABID97_RS24280 at 5021.410 kb on - strand, within ABID97_RS24280 at 5021.672 kb on + strand at 5021.672 kb on + strand at 5021.672 kb on + strand at 5021.672 kb on + strand at 5021.673 kb on - strand at 5022.230 kb on + strand, within ABID97_RS24285 at 5022.231 kb on - strand, within ABID97_RS24285 at 5022.231 kb on - strand, within ABID97_RS24285
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,019,698 + ABID97_RS24275 0.53 -0.1 5,019,699 - ABID97_RS24275 0.53 -0.4 5,020,197 + -0.2 5,020,197 + -0.3 5,020,197 + -0.0 5,020,197 + +1.0 5,020,198 - +0.2 5,020,198 - +0.3 5,020,581 + ABID97_RS24280 0.26 +1.0 5,020,581 + ABID97_RS24280 0.26 +0.3 5,020,582 - ABID97_RS24280 0.26 +0.9 5,021,115 + ABID97_RS24280 0.65 +0.2 5,021,116 - ABID97_RS24280 0.65 +1.0 5,021,116 - ABID97_RS24280 0.65 -0.5 5,021,116 - ABID97_RS24280 0.65 +0.9 5,021,116 - ABID97_RS24280 0.65 +0.2 5,021,116 - ABID97_RS24280 0.65 +1.7 5,021,211 + ABID97_RS24280 0.72 +0.1 5,021,212 - ABID97_RS24280 0.72 -0.2 5,021,212 - ABID97_RS24280 0.72 -0.9 5,021,212 - ABID97_RS24280 0.72 +0.3 5,021,409 + ABID97_RS24280 0.87 +0.8 5,021,409 + ABID97_RS24280 0.87 -0.6 5,021,410 - ABID97_RS24280 0.87 +0.0 5,021,410 - ABID97_RS24280 0.87 +1.5 5,021,672 + +0.3 5,021,672 + +0.2 5,021,672 + +0.8 5,021,672 + +0.9 5,021,673 - +0.5 5,022,230 + ABID97_RS24285 0.47 -0.3 5,022,231 - ABID97_RS24285 0.47 -0.0 5,022,231 - ABID97_RS24285 0.47 +0.6
Or see this region's nucleotide sequence