Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23655 and ABID97_RS23660 are separated by 8 nucleotides ABID97_RS23660 and ABID97_RS23665 are separated by 32 nucleotides ABID97_RS23665 and ABID97_RS23670 are separated by 93 nucleotides
ABID97_RS23655: ABID97_RS23655 - YicC/YloC family endoribonuclease, at 4,899,760 to 4,900,674
_RS23655
ABID97_RS23660: ABID97_RS23660 - guanylate kinase, at 4,900,683 to 4,901,303
_RS23660
ABID97_RS23665: ABID97_RS23665 - DNA-directed RNA polymerase subunit omega, at 4,901,336 to 4,901,539
_RS23665
ABID97_RS23670: ABID97_RS23670 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 4,901,633 to 4,903,888
_RS23670
Position (kb)
4901
4902 Strain fitness (log2 ratio)
-1
0
1 at 4900.572 kb on + strand, within ABID97_RS23655 at 4900.572 kb on + strand, within ABID97_RS23655 at 4900.573 kb on - strand, within ABID97_RS23655 at 4900.573 kb on - strand, within ABID97_RS23655 at 4900.658 kb on + strand at 4900.659 kb on - strand at 4901.409 kb on - strand, within ABID97_RS23665 at 4901.409 kb on - strand, within ABID97_RS23665 at 4901.588 kb on + strand at 4901.606 kb on + strand at 4901.607 kb on - strand at 4901.620 kb on + strand at 4901.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,900,572 + ABID97_RS23655 0.89 -0.7 4,900,572 + ABID97_RS23655 0.89 +0.7 4,900,573 - ABID97_RS23655 0.89 -1.0 4,900,573 - ABID97_RS23655 0.89 +0.5 4,900,658 + -0.7 4,900,659 - +1.6 4,901,409 - ABID97_RS23665 0.36 -1.5 4,901,409 - ABID97_RS23665 0.36 +0.3 4,901,588 + -0.5 4,901,606 + -0.0 4,901,607 - +0.1 4,901,620 + +1.5 4,901,629 - -1.1
Or see this region's nucleotide sequence