Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23665

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23655 and ABID97_RS23660 are separated by 8 nucleotidesABID97_RS23660 and ABID97_RS23665 are separated by 32 nucleotidesABID97_RS23665 and ABID97_RS23670 are separated by 93 nucleotides ABID97_RS23655: ABID97_RS23655 - YicC/YloC family endoribonuclease, at 4,899,760 to 4,900,674 _RS23655 ABID97_RS23660: ABID97_RS23660 - guanylate kinase, at 4,900,683 to 4,901,303 _RS23660 ABID97_RS23665: ABID97_RS23665 - DNA-directed RNA polymerase subunit omega, at 4,901,336 to 4,901,539 _RS23665 ABID97_RS23670: ABID97_RS23670 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 4,901,633 to 4,903,888 _RS23670 Position (kb) 4901 4902Strain fitness (log2 ratio) -1 0 1at 4900.572 kb on + strand, within ABID97_RS23655at 4900.572 kb on + strand, within ABID97_RS23655at 4900.573 kb on - strand, within ABID97_RS23655at 4900.573 kb on - strand, within ABID97_RS23655at 4900.658 kb on + strandat 4900.659 kb on - strandat 4901.409 kb on - strand, within ABID97_RS23665at 4901.409 kb on - strand, within ABID97_RS23665at 4901.588 kb on + strandat 4901.606 kb on + strandat 4901.607 kb on - strandat 4901.620 kb on + strandat 4901.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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4,900,572 + ABID97_RS23655 0.89 -0.7
4,900,572 + ABID97_RS23655 0.89 +0.7
4,900,573 - ABID97_RS23655 0.89 -1.0
4,900,573 - ABID97_RS23655 0.89 +0.5
4,900,658 + -0.7
4,900,659 - +1.6
4,901,409 - ABID97_RS23665 0.36 -1.5
4,901,409 - ABID97_RS23665 0.36 +0.3
4,901,588 + -0.5
4,901,606 + -0.0
4,901,607 - +0.1
4,901,620 + +1.5
4,901,629 - -1.1

Or see this region's nucleotide sequence