Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23315 and ABID97_RS23320 are separated by 118 nucleotides ABID97_RS23320 and ABID97_RS23325 overlap by 4 nucleotides
ABID97_RS23315: ABID97_RS23315 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,820,961 to 4,821,971
_RS23315
ABID97_RS23320: ABID97_RS23320 - c-type cytochrome biogenesis protein CcsB, at 4,822,090 to 4,823,406
_RS23320
ABID97_RS23325: ABID97_RS23325 - cytochrome c biogenesis protein ResB, at 4,823,403 to 4,825,571
_RS23325
Position (kb) 4822
4823
4824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4821.232 kb on + strand, within ABID97_RS23315 at 4821.233 kb on - strand, within ABID97_RS23315 at 4821.292 kb on + strand, within ABID97_RS23315 at 4821.292 kb on + strand, within ABID97_RS23315 at 4821.293 kb on - strand, within ABID97_RS23315 at 4821.293 kb on - strand, within ABID97_RS23315 at 4821.293 kb on - strand at 4821.355 kb on + strand, within ABID97_RS23315 at 4821.356 kb on - strand, within ABID97_RS23315 at 4821.356 kb on - strand, within ABID97_RS23315 at 4821.427 kb on + strand, within ABID97_RS23315 at 4821.427 kb on + strand, within ABID97_RS23315 at 4821.427 kb on + strand, within ABID97_RS23315 at 4821.427 kb on + strand, within ABID97_RS23315 at 4821.427 kb on + strand, within ABID97_RS23315 at 4821.428 kb on - strand, within ABID97_RS23315 at 4821.428 kb on - strand, within ABID97_RS23315 at 4821.428 kb on - strand, within ABID97_RS23315 at 4821.428 kb on - strand, within ABID97_RS23315 at 4821.479 kb on - strand, within ABID97_RS23315 at 4821.479 kb on - strand, within ABID97_RS23315 at 4821.529 kb on + strand, within ABID97_RS23315 at 4821.529 kb on + strand, within ABID97_RS23315 at 4821.577 kb on + strand, within ABID97_RS23315 at 4821.694 kb on + strand, within ABID97_RS23315 at 4821.694 kb on + strand, within ABID97_RS23315 at 4821.694 kb on + strand, within ABID97_RS23315 at 4821.695 kb on - strand, within ABID97_RS23315 at 4821.712 kb on + strand, within ABID97_RS23315 at 4821.712 kb on + strand, within ABID97_RS23315 at 4821.713 kb on - strand, within ABID97_RS23315 at 4821.713 kb on - strand, within ABID97_RS23315 at 4821.713 kb on - strand, within ABID97_RS23315 at 4821.889 kb on + strand at 4821.890 kb on - strand at 4822.009 kb on + strand at 4822.009 kb on + strand at 4822.009 kb on + strand at 4822.009 kb on + strand at 4822.091 kb on + strand at 4822.091 kb on + strand at 4822.092 kb on - strand at 4822.103 kb on + strand at 4822.104 kb on - strand at 4822.104 kb on - strand at 4822.104 kb on - strand at 4822.104 kb on - strand at 4822.239 kb on - strand, within ABID97_RS23320 at 4822.373 kb on + strand, within ABID97_RS23320 at 4822.373 kb on + strand, within ABID97_RS23320 at 4822.373 kb on + strand, within ABID97_RS23320 at 4822.373 kb on + strand, within ABID97_RS23320 at 4822.373 kb on + strand, within ABID97_RS23320 at 4822.374 kb on - strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.472 kb on + strand, within ABID97_RS23320 at 4822.473 kb on - strand, within ABID97_RS23320 at 4822.473 kb on - strand, within ABID97_RS23320 at 4822.473 kb on - strand, within ABID97_RS23320 at 4822.574 kb on + strand, within ABID97_RS23320 at 4822.575 kb on - strand, within ABID97_RS23320 at 4822.829 kb on + strand, within ABID97_RS23320 at 4822.830 kb on - strand, within ABID97_RS23320 at 4822.830 kb on - strand, within ABID97_RS23320 at 4822.835 kb on + strand, within ABID97_RS23320 at 4822.877 kb on + strand, within ABID97_RS23320 at 4823.008 kb on - strand, within ABID97_RS23320 at 4823.008 kb on - strand, within ABID97_RS23320 at 4823.042 kb on + strand, within ABID97_RS23320 at 4823.042 kb on + strand, within ABID97_RS23320 at 4823.043 kb on - strand, within ABID97_RS23320 at 4823.108 kb on + strand, within ABID97_RS23320 at 4823.108 kb on + strand, within ABID97_RS23320 at 4823.108 kb on + strand, within ABID97_RS23320 at 4823.109 kb on - strand, within ABID97_RS23320 at 4823.109 kb on - strand, within ABID97_RS23320 at 4823.154 kb on - strand, within ABID97_RS23320 at 4823.273 kb on + strand, within ABID97_RS23320 at 4823.273 kb on + strand, within ABID97_RS23320 at 4823.273 kb on + strand, within ABID97_RS23320 at 4823.273 kb on + strand, within ABID97_RS23320 at 4823.274 kb on - strand, within ABID97_RS23320 at 4823.276 kb on + strand at 4823.276 kb on + strand at 4823.277 kb on - strand at 4823.277 kb on - strand at 4823.277 kb on - strand at 4823.584 kb on + strand at 4823.584 kb on + strand at 4823.585 kb on - strand at 4823.585 kb on - strand at 4823.630 kb on - strand, within ABID97_RS23325 at 4823.722 kb on + strand, within ABID97_RS23325 at 4823.729 kb on - strand, within ABID97_RS23325 at 4823.729 kb on - strand, within ABID97_RS23325 at 4824.061 kb on + strand, within ABID97_RS23325 at 4824.061 kb on + strand, within ABID97_RS23325 at 4824.062 kb on - strand, within ABID97_RS23325 at 4824.244 kb on + strand, within ABID97_RS23325 at 4824.244 kb on + strand, within ABID97_RS23325 at 4824.245 kb on - strand, within ABID97_RS23325 at 4824.290 kb on - strand, within ABID97_RS23325
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,821,232 + ABID97_RS23315 0.27 -0.4 4,821,233 - ABID97_RS23315 0.27 -0.6 4,821,292 + ABID97_RS23315 0.33 -0.1 4,821,292 + ABID97_RS23315 0.33 -0.0 4,821,293 - ABID97_RS23315 0.33 -0.6 4,821,293 - ABID97_RS23315 0.33 +1.4 4,821,293 - +1.9 4,821,355 + ABID97_RS23315 0.39 +0.2 4,821,356 - ABID97_RS23315 0.39 +0.8 4,821,356 - ABID97_RS23315 0.39 -0.5 4,821,427 + ABID97_RS23315 0.46 -0.5 4,821,427 + ABID97_RS23315 0.46 -1.3 4,821,427 + ABID97_RS23315 0.46 +0.4 4,821,427 + ABID97_RS23315 0.46 -1.1 4,821,427 + ABID97_RS23315 0.46 -0.2 4,821,428 - ABID97_RS23315 0.46 -1.8 4,821,428 - ABID97_RS23315 0.46 -0.7 4,821,428 - ABID97_RS23315 0.46 +2.6 4,821,428 - ABID97_RS23315 0.46 -0.1 4,821,479 - ABID97_RS23315 0.51 +0.1 4,821,479 - ABID97_RS23315 0.51 +0.4 4,821,529 + ABID97_RS23315 0.56 +0.7 4,821,529 + ABID97_RS23315 0.56 +0.6 4,821,577 + ABID97_RS23315 0.61 +0.3 4,821,694 + ABID97_RS23315 0.73 +0.1 4,821,694 + ABID97_RS23315 0.73 +0.4 4,821,694 + ABID97_RS23315 0.73 +0.2 4,821,695 - ABID97_RS23315 0.73 -0.2 4,821,712 + ABID97_RS23315 0.74 +0.2 4,821,712 + ABID97_RS23315 0.74 -0.0 4,821,713 - ABID97_RS23315 0.74 +0.3 4,821,713 - ABID97_RS23315 0.74 -0.7 4,821,713 - ABID97_RS23315 0.74 -0.9 4,821,889 + +0.0 4,821,890 - +0.6 4,822,009 + -0.3 4,822,009 + -0.6 4,822,009 + +0.1 4,822,009 + -0.1 4,822,091 + -0.9 4,822,091 + -0.0 4,822,092 - +0.0 4,822,103 + -1.0 4,822,104 - +1.3 4,822,104 - -0.7 4,822,104 - -0.8 4,822,104 - -1.4 4,822,239 - ABID97_RS23320 0.11 -0.4 4,822,373 + ABID97_RS23320 0.21 +0.0 4,822,373 + ABID97_RS23320 0.21 -1.4 4,822,373 + ABID97_RS23320 0.21 -1.8 4,822,373 + ABID97_RS23320 0.21 -1.5 4,822,373 + ABID97_RS23320 0.21 -2.1 4,822,374 - ABID97_RS23320 0.22 -1.1 4,822,472 + ABID97_RS23320 0.29 -0.2 4,822,472 + ABID97_RS23320 0.29 +0.2 4,822,472 + ABID97_RS23320 0.29 -0.7 4,822,472 + ABID97_RS23320 0.29 +0.9 4,822,472 + ABID97_RS23320 0.29 +0.3 4,822,472 + ABID97_RS23320 0.29 -0.6 4,822,472 + ABID97_RS23320 0.29 -1.9 4,822,473 - ABID97_RS23320 0.29 -2.3 4,822,473 - ABID97_RS23320 0.29 -0.1 4,822,473 - ABID97_RS23320 0.29 -1.5 4,822,574 + ABID97_RS23320 0.37 -1.5 4,822,575 - ABID97_RS23320 0.37 -0.6 4,822,829 + ABID97_RS23320 0.56 -0.3 4,822,830 - ABID97_RS23320 0.56 -3.0 4,822,830 - ABID97_RS23320 0.56 +0.2 4,822,835 + ABID97_RS23320 0.57 +0.0 4,822,877 + ABID97_RS23320 0.60 -2.2 4,823,008 - ABID97_RS23320 0.70 -2.2 4,823,008 - ABID97_RS23320 0.70 +1.2 4,823,042 + ABID97_RS23320 0.72 -0.0 4,823,042 + ABID97_RS23320 0.72 -0.3 4,823,043 - ABID97_RS23320 0.72 +0.3 4,823,108 + ABID97_RS23320 0.77 -0.4 4,823,108 + ABID97_RS23320 0.77 -2.1 4,823,108 + ABID97_RS23320 0.77 -1.0 4,823,109 - ABID97_RS23320 0.77 -2.4 4,823,109 - ABID97_RS23320 0.77 -1.4 4,823,154 - ABID97_RS23320 0.81 -1.1 4,823,273 + ABID97_RS23320 0.90 -0.8 4,823,273 + ABID97_RS23320 0.90 -2.0 4,823,273 + ABID97_RS23320 0.90 -1.6 4,823,273 + ABID97_RS23320 0.90 -1.7 4,823,274 - ABID97_RS23320 0.90 -1.4 4,823,276 + -0.5 4,823,276 + -0.8 4,823,277 - -1.9 4,823,277 - +0.3 4,823,277 - -2.2 4,823,584 + -1.8 4,823,584 + -1.3 4,823,585 - -0.8 4,823,585 - -1.0 4,823,630 - ABID97_RS23325 0.10 -2.0 4,823,722 + ABID97_RS23325 0.15 -2.0 4,823,729 - ABID97_RS23325 0.15 -1.4 4,823,729 - ABID97_RS23325 0.15 -1.2 4,824,061 + ABID97_RS23325 0.30 +0.5 4,824,061 + ABID97_RS23325 0.30 -1.6 4,824,062 - ABID97_RS23325 0.30 -1.7 4,824,244 + ABID97_RS23325 0.39 -2.3 4,824,244 + ABID97_RS23325 0.39 -0.9 4,824,245 - ABID97_RS23325 0.39 -1.1 4,824,290 - ABID97_RS23325 0.41 -0.2
Or see this region's nucleotide sequence