Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23115 and ABID97_RS23120 are separated by 8 nucleotides ABID97_RS23120 and ABID97_RS23125 are separated by 12 nucleotides
ABID97_RS23115: ABID97_RS23115 - dicarboxylate/amino acid:cation symporter, at 4,780,314 to 4,781,621
_RS23115
ABID97_RS23120: ABID97_RS23120 - amino acid ABC transporter substrate-binding protein, at 4,781,630 to 4,782,550
_RS23120
ABID97_RS23125: ABID97_RS23125 - AAA family ATPase, at 4,782,563 to 4,783,741
_RS23125
Position (kb) 4781
4782
4783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4780.897 kb on - strand, within ABID97_RS23115 at 4781.004 kb on + strand, within ABID97_RS23115 at 4781.004 kb on + strand, within ABID97_RS23115 at 4781.004 kb on + strand, within ABID97_RS23115 at 4781.005 kb on - strand, within ABID97_RS23115 at 4781.005 kb on - strand, within ABID97_RS23115 at 4781.021 kb on - strand, within ABID97_RS23115 at 4781.032 kb on + strand, within ABID97_RS23115 at 4781.032 kb on + strand, within ABID97_RS23115 at 4781.217 kb on + strand, within ABID97_RS23115 at 4781.247 kb on + strand, within ABID97_RS23115 at 4781.248 kb on - strand, within ABID97_RS23115 at 4781.248 kb on - strand, within ABID97_RS23115 at 4781.248 kb on - strand, within ABID97_RS23115 at 4781.248 kb on - strand, within ABID97_RS23115 at 4781.248 kb on - strand, within ABID97_RS23115 at 4781.284 kb on - strand, within ABID97_RS23115 at 4781.284 kb on - strand, within ABID97_RS23115 at 4781.284 kb on - strand, within ABID97_RS23115 at 4781.843 kb on + strand, within ABID97_RS23120 at 4782.311 kb on + strand, within ABID97_RS23120 at 4782.329 kb on + strand, within ABID97_RS23120 at 4782.329 kb on + strand, within ABID97_RS23120 at 4782.329 kb on + strand, within ABID97_RS23120 at 4782.329 kb on + strand, within ABID97_RS23120 at 4782.330 kb on - strand, within ABID97_RS23120 at 4782.330 kb on - strand, within ABID97_RS23120 at 4782.330 kb on - strand, within ABID97_RS23120 at 4782.338 kb on + strand, within ABID97_RS23120 at 4782.338 kb on + strand, within ABID97_RS23120 at 4782.359 kb on + strand, within ABID97_RS23120 at 4782.359 kb on + strand, within ABID97_RS23120 at 4782.360 kb on - strand, within ABID97_RS23120 at 4782.548 kb on + strand at 4782.852 kb on + strand, within ABID97_RS23125 at 4782.853 kb on - strand, within ABID97_RS23125 at 4783.074 kb on + strand, within ABID97_RS23125 at 4783.074 kb on + strand, within ABID97_RS23125 at 4783.074 kb on + strand, within ABID97_RS23125 at 4783.074 kb on + strand, within ABID97_RS23125 at 4783.074 kb on + strand, within ABID97_RS23125 at 4783.075 kb on - strand, within ABID97_RS23125 at 4783.075 kb on - strand, within ABID97_RS23125 at 4783.075 kb on - strand, within ABID97_RS23125 at 4783.075 kb on - strand, within ABID97_RS23125 at 4783.078 kb on + strand, within ABID97_RS23125 at 4783.078 kb on + strand, within ABID97_RS23125 at 4783.131 kb on + strand, within ABID97_RS23125 at 4783.132 kb on - strand, within ABID97_RS23125 at 4783.132 kb on - strand, within ABID97_RS23125 at 4783.132 kb on - strand, within ABID97_RS23125 at 4783.198 kb on - strand, within ABID97_RS23125 at 4783.462 kb on + strand, within ABID97_RS23125
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,780,897 - ABID97_RS23115 0.45 -0.1 4,781,004 + ABID97_RS23115 0.53 -1.2 4,781,004 + ABID97_RS23115 0.53 -0.2 4,781,004 + ABID97_RS23115 0.53 -1.6 4,781,005 - ABID97_RS23115 0.53 -0.2 4,781,005 - ABID97_RS23115 0.53 -0.5 4,781,021 - ABID97_RS23115 0.54 -1.1 4,781,032 + ABID97_RS23115 0.55 -0.5 4,781,032 + ABID97_RS23115 0.55 -0.4 4,781,217 + ABID97_RS23115 0.69 -0.2 4,781,247 + ABID97_RS23115 0.71 +0.1 4,781,248 - ABID97_RS23115 0.71 -0.9 4,781,248 - ABID97_RS23115 0.71 -2.2 4,781,248 - ABID97_RS23115 0.71 -1.6 4,781,248 - ABID97_RS23115 0.71 +1.0 4,781,248 - ABID97_RS23115 0.71 -0.4 4,781,284 - ABID97_RS23115 0.74 -0.1 4,781,284 - ABID97_RS23115 0.74 +0.3 4,781,284 - ABID97_RS23115 0.74 +0.2 4,781,843 + ABID97_RS23120 0.23 +0.5 4,782,311 + ABID97_RS23120 0.74 -0.2 4,782,329 + ABID97_RS23120 0.76 +0.2 4,782,329 + ABID97_RS23120 0.76 +0.6 4,782,329 + ABID97_RS23120 0.76 -0.4 4,782,329 + ABID97_RS23120 0.76 +0.2 4,782,330 - ABID97_RS23120 0.76 +0.3 4,782,330 - ABID97_RS23120 0.76 -0.3 4,782,330 - ABID97_RS23120 0.76 -0.2 4,782,338 + ABID97_RS23120 0.77 +0.0 4,782,338 + ABID97_RS23120 0.77 -0.3 4,782,359 + ABID97_RS23120 0.79 -0.0 4,782,359 + ABID97_RS23120 0.79 +0.1 4,782,360 - ABID97_RS23120 0.79 -0.9 4,782,548 + -0.1 4,782,852 + ABID97_RS23125 0.25 -0.4 4,782,853 - ABID97_RS23125 0.25 +0.1 4,783,074 + ABID97_RS23125 0.43 +0.0 4,783,074 + ABID97_RS23125 0.43 -0.7 4,783,074 + ABID97_RS23125 0.43 +0.0 4,783,074 + ABID97_RS23125 0.43 +0.4 4,783,074 + ABID97_RS23125 0.43 +0.5 4,783,075 - ABID97_RS23125 0.43 +0.7 4,783,075 - ABID97_RS23125 0.43 +0.4 4,783,075 - ABID97_RS23125 0.43 -0.0 4,783,075 - ABID97_RS23125 0.43 -0.2 4,783,078 + ABID97_RS23125 0.44 -0.0 4,783,078 + ABID97_RS23125 0.44 +0.6 4,783,131 + ABID97_RS23125 0.48 -0.0 4,783,132 - ABID97_RS23125 0.48 +2.2 4,783,132 - ABID97_RS23125 0.48 -0.0 4,783,132 - ABID97_RS23125 0.48 +0.4 4,783,198 - ABID97_RS23125 0.54 +0.1 4,783,462 + ABID97_RS23125 0.76 +1.9
Or see this region's nucleotide sequence