Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22900 and ABID97_RS22905 are separated by 151 nucleotides ABID97_RS22905 and ABID97_RS22910 are separated by 99 nucleotides ABID97_RS22910 and ABID97_RS22915 are separated by 44 nucleotides ABID97_RS22915 and ABID97_RS22920 overlap by 4 nucleotides
ABID97_RS22900: ABID97_RS22900 - ATP-dependent Clp protease proteolytic subunit, at 4,741,592 to 4,742,185
_RS22900
ABID97_RS22905: ABID97_RS22905 - hypothetical protein, at 4,742,337 to 4,742,696
_RS22905
ABID97_RS22910: ABID97_RS22910 - hypothetical protein, at 4,742,796 to 4,743,179
_RS22910
ABID97_RS22915: ABID97_RS22915 - ATP/GTP-binding protein, at 4,743,224 to 4,743,748
_RS22915
ABID97_RS22920: ABID97_RS22920 - hypothetical protein, at 4,743,745 to 4,744,473
_RS22920
Position (kb) 4742
4743
4744 Strain fitness (log2 ratio) -1
0
1 at 4741.876 kb on - strand, within ABID97_RS22900 at 4741.876 kb on - strand, within ABID97_RS22900 at 4742.207 kb on + strand at 4742.464 kb on + strand, within ABID97_RS22905 at 4742.465 kb on - strand, within ABID97_RS22905 at 4742.710 kb on - strand at 4742.836 kb on + strand, within ABID97_RS22910 at 4742.837 kb on - strand, within ABID97_RS22910 at 4743.339 kb on + strand, within ABID97_RS22915 at 4743.339 kb on + strand, within ABID97_RS22915 at 4743.432 kb on + strand, within ABID97_RS22915 at 4743.433 kb on - strand, within ABID97_RS22915 at 4743.433 kb on - strand, within ABID97_RS22915 at 4743.740 kb on + strand at 4743.740 kb on + strand at 4743.740 kb on + strand at 4743.740 kb on + strand at 4743.741 kb on - strand at 4743.741 kb on - strand at 4744.096 kb on + strand, within ABID97_RS22920 at 4744.097 kb on - strand, within ABID97_RS22920 at 4744.097 kb on - strand, within ABID97_RS22920 at 4744.097 kb on - strand, within ABID97_RS22920
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,741,876 - ABID97_RS22900 0.48 -0.4 4,741,876 - ABID97_RS22900 0.48 +0.8 4,742,207 + +0.4 4,742,464 + ABID97_RS22905 0.35 -0.1 4,742,465 - ABID97_RS22905 0.36 -0.3 4,742,710 - +1.1 4,742,836 + ABID97_RS22910 0.10 -0.4 4,742,837 - ABID97_RS22910 0.11 -1.5 4,743,339 + ABID97_RS22915 0.22 -0.6 4,743,339 + ABID97_RS22915 0.22 -0.1 4,743,432 + ABID97_RS22915 0.40 +1.1 4,743,433 - ABID97_RS22915 0.40 +0.1 4,743,433 - ABID97_RS22915 0.40 +0.3 4,743,740 + +0.1 4,743,740 + -0.4 4,743,740 + -0.0 4,743,740 + +0.2 4,743,741 - +1.1 4,743,741 - +0.1 4,744,096 + ABID97_RS22920 0.48 -0.3 4,744,097 - ABID97_RS22920 0.48 -0.4 4,744,097 - ABID97_RS22920 0.48 +1.5 4,744,097 - ABID97_RS22920 0.48 +1.1
Or see this region's nucleotide sequence