Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21135 and ABID97_RS21140 overlap by 4 nucleotides ABID97_RS21140 and ABID97_RS21145 are separated by 11 nucleotides ABID97_RS21145 and ABID97_RS21150 are separated by 16 nucleotides ABID97_RS21150 and ABID97_RS21155 are separated by 40 nucleotides
ABID97_RS21135: ABID97_RS21135 - glycerophosphodiester phosphodiesterase, at 4,361,959 to 4,362,951
_RS21135
ABID97_RS21140: ABID97_RS21140 - hypothetical protein, at 4,362,948 to 4,363,226
_RS21140
ABID97_RS21145: ABID97_RS21145 - DUF411 domain-containing protein, at 4,363,238 to 4,363,702
_RS21145
ABID97_RS21150: ABID97_RS21150 - FAD-dependent oxidoreductase, at 4,363,719 to 4,365,017
_RS21150
ABID97_RS21155: ABID97_RS21155 - P1 family peptidase, at 4,365,058 to 4,366,083
_RS21155
Position (kb) 4363
4364
4365
4366 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4362.877 kb on + strand at 4363.694 kb on + strand at 4363.695 kb on - strand at 4363.695 kb on - strand at 4364.371 kb on + strand, within ABID97_RS21150 at 4364.372 kb on - strand, within ABID97_RS21150 at 4364.372 kb on - strand, within ABID97_RS21150 at 4364.372 kb on - strand, within ABID97_RS21150 at 4364.372 kb on - strand, within ABID97_RS21150 at 4364.372 kb on - strand, within ABID97_RS21150 at 4364.414 kb on + strand, within ABID97_RS21150 at 4364.414 kb on + strand, within ABID97_RS21150 at 4364.415 kb on - strand, within ABID97_RS21150 at 4364.855 kb on - strand, within ABID97_RS21150 at 4364.855 kb on - strand, within ABID97_RS21150 at 4365.030 kb on + strand at 4365.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,362,877 + +0.4 4,363,694 + -0.0 4,363,695 - +1.3 4,363,695 - -0.1 4,364,371 + ABID97_RS21150 0.50 -2.3 4,364,372 - ABID97_RS21150 0.50 -2.3 4,364,372 - ABID97_RS21150 0.50 -2.9 4,364,372 - ABID97_RS21150 0.50 -2.7 4,364,372 - ABID97_RS21150 0.50 -2.0 4,364,372 - ABID97_RS21150 0.50 -2.9 4,364,414 + ABID97_RS21150 0.54 -3.6 4,364,414 + ABID97_RS21150 0.54 -2.7 4,364,415 - ABID97_RS21150 0.54 -2.4 4,364,855 - ABID97_RS21150 0.87 -3.4 4,364,855 - ABID97_RS21150 0.87 -2.7 4,365,030 + +0.1 4,365,122 + -1.3
Or see this region's nucleotide sequence