Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20970 and ABID97_RS20975 are separated by 46 nucleotides ABID97_RS20975 and ABID97_RS20980 are separated by 108 nucleotides ABID97_RS20980 and ABID97_RS20985 are separated by 40 nucleotides ABID97_RS20985 and ABID97_RS20990 are separated by 0 nucleotides
ABID97_RS20970: ABID97_RS20970 - putative quinol monooxygenase, at 4,336,609 to 4,336,920
_RS20970
ABID97_RS20975: ABID97_RS20975 - dienelactone hydrolase family protein, at 4,336,967 to 4,337,632
_RS20975
ABID97_RS20980: ABID97_RS20980 - transcriptional repressor, at 4,337,741 to 4,338,208
_RS20980
ABID97_RS20985: ABID97_RS20985 - glutathione S-transferase, at 4,338,249 to 4,338,911
_RS20985
ABID97_RS20990: ABID97_RS20990 - enoyl-CoA hydratase/isomerase family protein, at 4,338,912 to 4,339,709
_RS20990
Position (kb) 4337
4338
4339 Strain fitness (log2 ratio) -2
-1
0
1 at 4337.043 kb on + strand, within ABID97_RS20975 at 4337.043 kb on + strand, within ABID97_RS20975 at 4337.044 kb on - strand, within ABID97_RS20975 at 4337.209 kb on - strand, within ABID97_RS20975 at 4337.639 kb on + strand at 4337.646 kb on + strand at 4337.646 kb on + strand at 4337.647 kb on - strand at 4337.647 kb on - strand at 4337.672 kb on + strand at 4337.673 kb on - strand at 4337.943 kb on - strand, within ABID97_RS20980 at 4338.282 kb on + strand at 4338.304 kb on - strand at 4338.304 kb on - strand at 4338.861 kb on + strand at 4338.862 kb on - strand at 4339.051 kb on + strand, within ABID97_RS20990 at 4339.051 kb on + strand, within ABID97_RS20990 at 4339.208 kb on - strand, within ABID97_RS20990
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,337,043 + ABID97_RS20975 0.11 -1.0 4,337,043 + ABID97_RS20975 0.11 -0.2 4,337,044 - ABID97_RS20975 0.12 -0.1 4,337,209 - ABID97_RS20975 0.36 +0.1 4,337,639 + -1.0 4,337,646 + -0.8 4,337,646 + +1.6 4,337,647 - -0.1 4,337,647 - -1.0 4,337,672 + -1.6 4,337,673 - -0.7 4,337,943 - ABID97_RS20980 0.43 -2.2 4,338,282 + -0.3 4,338,304 - +0.2 4,338,304 - -0.2 4,338,861 + -0.0 4,338,862 - +0.3 4,339,051 + ABID97_RS20990 0.17 +0.4 4,339,051 + ABID97_RS20990 0.17 +0.1 4,339,208 - ABID97_RS20990 0.37 -0.0
Or see this region's nucleotide sequence