Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20410 and ABID97_RS20415 are separated by 21 nucleotides ABID97_RS20415 and ABID97_RS20420 are separated by 7 nucleotides ABID97_RS20420 and ABID97_RS20425 are separated by 1 nucleotides ABID97_RS20425 and ABID97_RS20430 are separated by 16 nucleotides
ABID97_RS20410: ABID97_RS20410 - ABC transporter transmembrane domain-containing protein, at 4,213,772 to 4,215,556
_RS20410
ABID97_RS20415: ABID97_RS20415 - DUF1178 family protein, at 4,215,578 to 4,216,045
_RS20415
ABID97_RS20420: ABID97_RS20420 - NUDIX hydrolase, at 4,216,053 to 4,216,661
_RS20420
ABID97_RS20425: ABID97_RS20425 - DUF2818 family protein, at 4,216,663 to 4,216,968
_RS20425
ABID97_RS20430: ABID97_RS20430 - NADH-quinone oxidoreductase subunit NuoN, at 4,216,985 to 4,218,472
_RS20430
Position (kb) 4216
4217 Strain fitness (log2 ratio) -2
-1
0
1 at 4215.215 kb on + strand, within ABID97_RS20410 at 4215.215 kb on + strand, within ABID97_RS20410 at 4215.521 kb on + strand at 4215.579 kb on + strand at 4215.705 kb on + strand, within ABID97_RS20415 at 4215.706 kb on - strand, within ABID97_RS20415 at 4216.029 kb on - strand at 4216.029 kb on - strand at 4216.029 kb on - strand at 4216.029 kb on - strand at 4216.055 kb on - strand at 4216.324 kb on + strand, within ABID97_RS20420 at 4216.324 kb on + strand, within ABID97_RS20420 at 4216.324 kb on + strand, within ABID97_RS20420 at 4216.325 kb on - strand, within ABID97_RS20420 at 4216.525 kb on + strand, within ABID97_RS20420 at 4216.526 kb on - strand, within ABID97_RS20420 at 4216.685 kb on + strand at 4216.742 kb on + strand, within ABID97_RS20425 at 4216.743 kb on - strand, within ABID97_RS20425 at 4216.817 kb on + strand, within ABID97_RS20425 at 4216.817 kb on + strand, within ABID97_RS20425 at 4216.817 kb on + strand, within ABID97_RS20425
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,215,215 + ABID97_RS20410 0.81 +0.1 4,215,215 + ABID97_RS20410 0.81 -0.8 4,215,521 + +0.5 4,215,579 + +0.3 4,215,705 + ABID97_RS20415 0.27 +1.4 4,215,706 - ABID97_RS20415 0.27 -0.4 4,216,029 - +0.6 4,216,029 - -0.2 4,216,029 - +0.1 4,216,029 - -0.3 4,216,055 - +0.1 4,216,324 + ABID97_RS20420 0.44 -0.9 4,216,324 + ABID97_RS20420 0.44 -1.0 4,216,324 + ABID97_RS20420 0.44 +0.5 4,216,325 - ABID97_RS20420 0.45 -0.3 4,216,525 + ABID97_RS20420 0.78 -0.2 4,216,526 - ABID97_RS20420 0.78 +0.1 4,216,685 + -2.7 4,216,742 + ABID97_RS20425 0.26 -2.1 4,216,743 - ABID97_RS20425 0.26 -0.8 4,216,817 + ABID97_RS20425 0.50 -1.5 4,216,817 + ABID97_RS20425 0.50 -1.5 4,216,817 + ABID97_RS20425 0.50 -2.7
Or see this region's nucleotide sequence