Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19925 and ABID97_RS19930 are separated by 95 nucleotides ABID97_RS19930 and ABID97_RS19935 are separated by 50 nucleotides ABID97_RS19935 and ABID97_RS19940 are separated by 72 nucleotides
ABID97_RS19925: ABID97_RS19925 - ABC transporter substrate-binding protein, at 4,113,026 to 4,114,756
_RS19925
ABID97_RS19930: ABID97_RS19930 - DUF2160 domain-containing protein, at 4,114,852 to 4,115,160
_RS19930
ABID97_RS19935: ABID97_RS19935 - carbohydrate ABC transporter permease, at 4,115,211 to 4,116,023
_RS19935
ABID97_RS19940: ABID97_RS19940 - sugar ABC transporter permease, at 4,116,096 to 4,116,986
_RS19940
Position (kb) 4114
4115
4116 Strain fitness (log2 ratio) -1
0
1 at 4114.131 kb on + strand, within ABID97_RS19925 at 4114.320 kb on + strand, within ABID97_RS19925 at 4114.321 kb on - strand, within ABID97_RS19925 at 4114.396 kb on - strand, within ABID97_RS19925 at 4114.522 kb on - strand, within ABID97_RS19925 at 4114.743 kb on + strand at 4114.744 kb on - strand at 4114.983 kb on - strand, within ABID97_RS19930 at 4115.209 kb on - strand at 4115.515 kb on + strand, within ABID97_RS19935 at 4115.515 kb on + strand, within ABID97_RS19935 at 4115.756 kb on - strand, within ABID97_RS19935 at 4115.756 kb on - strand, within ABID97_RS19935 at 4115.807 kb on - strand, within ABID97_RS19935 at 4115.807 kb on - strand, within ABID97_RS19935 at 4115.950 kb on + strand at 4115.977 kb on + strand at 4116.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,114,131 + ABID97_RS19925 0.64 +0.5 4,114,320 + ABID97_RS19925 0.75 +0.6 4,114,321 - ABID97_RS19925 0.75 +0.1 4,114,396 - ABID97_RS19925 0.79 -0.0 4,114,522 - ABID97_RS19925 0.86 -0.5 4,114,743 + -0.3 4,114,744 - -0.6 4,114,983 - ABID97_RS19930 0.42 -0.5 4,115,209 - -0.6 4,115,515 + ABID97_RS19935 0.37 +1.4 4,115,515 + ABID97_RS19935 0.37 -0.2 4,115,756 - ABID97_RS19935 0.67 +1.6 4,115,756 - ABID97_RS19935 0.67 -0.9 4,115,807 - ABID97_RS19935 0.73 -0.6 4,115,807 - ABID97_RS19935 0.73 -0.6 4,115,950 + -0.2 4,115,977 + -0.2 4,116,145 + +0.4
Or see this region's nucleotide sequence