Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19025

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19020 and ABID97_RS19025 are separated by 2 nucleotidesABID97_RS19025 and ABID97_RS19030 are separated by 87 nucleotides ABID97_RS19020: ABID97_RS19020 - 2-methylaconitate cis-trans isomerase PrpF, at 3,914,607 to 3,915,785 _RS19020 ABID97_RS19025: ABID97_RS19025 - tripartite tricarboxylate transporter substrate binding protein, at 3,915,788 to 3,916,774 _RS19025 ABID97_RS19030: ABID97_RS19030 - tripartite tricarboxylate transporter substrate binding protein, at 3,916,862 to 3,917,860 _RS19030 Position (kb) 3915 3916 3917Strain fitness (log2 ratio) -1 0 1at 3915.538 kb on + strand, within ABID97_RS19020at 3916.013 kb on + strand, within ABID97_RS19025at 3917.267 kb on - strand, within ABID97_RS19030at 3917.611 kb on - strand, within ABID97_RS19030

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,915,538 + ABID97_RS19020 0.79 +1.1
3,916,013 + ABID97_RS19025 0.23 -0.8
3,917,267 - ABID97_RS19030 0.41 -0.1
3,917,611 - ABID97_RS19030 0.75 +0.3

Or see this region's nucleotide sequence