Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13560

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13550 and ABID97_RS13555 overlap by 8 nucleotidesABID97_RS13555 and ABID97_RS13560 overlap by 4 nucleotidesABID97_RS13560 and ABID97_RS13565 overlap by 4 nucleotidesABID97_RS13565 and ABID97_RS13570 are separated by 73 nucleotides ABID97_RS13550: ABID97_RS13550 - branched-chain amino acid ABC transporter permease, at 2,824,267 to 2,825,124 _RS13550 ABID97_RS13555: ABID97_RS13555 - branched-chain amino acid ABC transporter permease, at 2,825,117 to 2,826,079 _RS13555 ABID97_RS13560: ABID97_RS13560 - ATP-binding cassette domain-containing protein, at 2,826,076 to 2,826,837 _RS13560 ABID97_RS13565: ABID97_RS13565 - ABC transporter ATP-binding protein, at 2,826,834 to 2,827,550 _RS13565 ABID97_RS13570: ABID97_RS13570 - IclR family transcriptional regulator, at 2,827,624 to 2,828,337 _RS13570 Position (kb) 2826 2827Strain fitness (log2 ratio) -1 0 1at 2825.598 kb on - strand, within ABID97_RS13555at 2825.994 kb on + strandat 2826.425 kb on - strand, within ABID97_RS13560at 2826.817 kb on + strandat 2827.444 kb on - strand, within ABID97_RS13565at 2827.444 kb on - strand, within ABID97_RS13565at 2827.444 kb on - strand, within ABID97_RS13565at 2827.738 kb on + strand, within ABID97_RS13570

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,825,598 - ABID97_RS13555 0.50 +1.1
2,825,994 + +0.6
2,826,425 - ABID97_RS13560 0.46 -1.3
2,826,817 + +0.3
2,827,444 - ABID97_RS13565 0.85 -0.1
2,827,444 - ABID97_RS13565 0.85 +0.4
2,827,444 - ABID97_RS13565 0.85 +0.2
2,827,738 + ABID97_RS13570 0.16 -0.6

Or see this region's nucleotide sequence