Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12020

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12015 and ABID97_RS12020 overlap by 8 nucleotidesABID97_RS12020 and ABID97_RS12025 are separated by 89 nucleotides ABID97_RS12015: ABID97_RS12015 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 2,480,067 to 2,481,493 _RS12015 ABID97_RS12020: ABID97_RS12020 - polysaccharide pyruvyl transferase family protein, at 2,481,486 to 2,482,634 _RS12020 ABID97_RS12025: ABID97_RS12025 - OBAP family protein, at 2,482,724 to 2,483,512 _RS12025 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -1 0 1at 2480.682 kb on + strand, within ABID97_RS12015at 2481.159 kb on + strand, within ABID97_RS12015at 2481.159 kb on + strand, within ABID97_RS12015at 2481.159 kb on + strand, within ABID97_RS12015at 2481.160 kb on - strand, within ABID97_RS12015at 2481.160 kb on - strand, within ABID97_RS12015at 2481.160 kb on - strand, within ABID97_RS12015at 2481.160 kb on - strand, within ABID97_RS12015at 2481.547 kb on + strandat 2481.548 kb on - strandat 2482.387 kb on + strand, within ABID97_RS12020at 2482.553 kb on - strandat 2482.726 kb on - strandat 2482.800 kb on - strandat 2483.028 kb on + strand, within ABID97_RS12025at 2483.075 kb on + strand, within ABID97_RS12025at 2483.182 kb on - strand, within ABID97_RS12025

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,480,682 + ABID97_RS12015 0.43 -0.8
2,481,159 + ABID97_RS12015 0.77 +0.1
2,481,159 + ABID97_RS12015 0.77 +0.3
2,481,159 + ABID97_RS12015 0.77 -0.4
2,481,160 - ABID97_RS12015 0.77 -0.2
2,481,160 - ABID97_RS12015 0.77 +0.5
2,481,160 - ABID97_RS12015 0.77 -0.4
2,481,160 - ABID97_RS12015 0.77 +0.1
2,481,547 + -0.3
2,481,548 - +0.5
2,482,387 + ABID97_RS12020 0.78 -1.4
2,482,553 - -0.5
2,482,726 - -0.1
2,482,800 - -1.0
2,483,028 + ABID97_RS12025 0.39 +0.5
2,483,075 + ABID97_RS12025 0.44 -0.0
2,483,182 - ABID97_RS12025 0.58 -0.1

Or see this region's nucleotide sequence