Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11735 and ABID97_RS11740 are separated by 371 nucleotides ABID97_RS11740 and ABID97_RS11745 are separated by 434 nucleotides ABID97_RS11745 and ABID97_RS11750 are separated by 81 nucleotides ABID97_RS11750 and ABID97_RS11755 are separated by 55 nucleotides
ABID97_RS11735: ABID97_RS11735 - PDR/VanB family oxidoreductase, at 2,426,992 to 2,427,963
_RS11735
ABID97_RS11740: ABID97_RS11740 - JAB domain-containing protein, at 2,428,335 to 2,428,472
_RS11740
ABID97_RS11745: ABID97_RS11745 - ParB N-terminal domain-containing protein, at 2,428,907 to 2,429,179
_RS11745
ABID97_RS11750: ABID97_RS11750 - trimeric intracellular cation channel family protein, at 2,429,261 to 2,429,878
_RS11750
ABID97_RS11755: ABID97_RS11755 - dihydrofolate reductase family protein, at 2,429,934 to 2,430,590
_RS11755
Position (kb) 2428
2429
2430 Strain fitness (log2 ratio) -1
0
1 at 2428.277 kb on + strand at 2428.444 kb on - strand, within ABID97_RS11740 at 2429.098 kb on - strand, within ABID97_RS11745 at 2429.279 kb on + strand at 2429.280 kb on - strand at 2429.450 kb on + strand, within ABID97_RS11750 at 2429.450 kb on + strand, within ABID97_RS11750 at 2429.877 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 2,428,277 + +0.1 2,428,444 - ABID97_RS11740 0.79 -0.9 2,429,098 - ABID97_RS11745 0.70 +0.3 2,429,279 + -0.5 2,429,280 - +0.0 2,429,450 + ABID97_RS11750 0.31 +0.8 2,429,450 + ABID97_RS11750 0.31 -1.0 2,429,877 - -0.5
Or see this region's nucleotide sequence