Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11070

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11065 and ABID97_RS11070 are separated by 34 nucleotidesABID97_RS11070 and ABID97_RS11075 are separated by 10 nucleotidesABID97_RS11075 and ABID97_RS11080 are separated by 60 nucleotides ABID97_RS11065: ABID97_RS11065 - Gfo/Idh/MocA family oxidoreductase, at 2,289,282 to 2,290,445 _RS11065 ABID97_RS11070: ABID97_RS11070 - enolase C-terminal domain-like protein, at 2,290,480 to 2,291,910 _RS11070 ABID97_RS11075: ABID97_RS11075 - ABC transporter ATP-binding protein, at 2,291,921 to 2,292,700 _RS11075 ABID97_RS11080: ABID97_RS11080 - ABC transporter substrate-binding protein, at 2,292,761 to 2,293,771 _RS11080 Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -1 0 1at 2289.733 kb on + strand, within ABID97_RS11065at 2290.472 kb on - strandat 2290.485 kb on - strandat 2291.337 kb on + strand, within ABID97_RS11070at 2291.799 kb on - strandat 2292.300 kb on + strand, within ABID97_RS11075at 2292.300 kb on + strand, within ABID97_RS11075at 2292.301 kb on - strand, within ABID97_RS11075at 2292.762 kb on + strandat 2292.789 kb on + strandat 2292.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,289,733 + ABID97_RS11065 0.39 +0.0
2,290,472 - +0.7
2,290,485 - +1.7
2,291,337 + ABID97_RS11070 0.60 -1.3
2,291,799 - +0.4
2,292,300 + ABID97_RS11075 0.49 -0.4
2,292,300 + ABID97_RS11075 0.49 -1.2
2,292,301 - ABID97_RS11075 0.49 +0.3
2,292,762 + -0.5
2,292,789 + -0.4
2,292,831 + +0.6

Or see this region's nucleotide sequence