Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11065 and ABID97_RS11070 are separated by 34 nucleotides ABID97_RS11070 and ABID97_RS11075 are separated by 10 nucleotides ABID97_RS11075 and ABID97_RS11080 are separated by 60 nucleotides
ABID97_RS11065: ABID97_RS11065 - Gfo/Idh/MocA family oxidoreductase, at 2,289,282 to 2,290,445
_RS11065
ABID97_RS11070: ABID97_RS11070 - enolase C-terminal domain-like protein, at 2,290,480 to 2,291,910
_RS11070
ABID97_RS11075: ABID97_RS11075 - ABC transporter ATP-binding protein, at 2,291,921 to 2,292,700
_RS11075
ABID97_RS11080: ABID97_RS11080 - ABC transporter substrate-binding protein, at 2,292,761 to 2,293,771
_RS11080
Position (kb)
2290
2291
2292 Strain fitness (log2 ratio)
-1
0
1 at 2289.733 kb on + strand, within ABID97_RS11065 at 2290.472 kb on - strand at 2290.485 kb on - strand at 2291.337 kb on + strand, within ABID97_RS11070 at 2291.799 kb on - strand at 2292.300 kb on + strand, within ABID97_RS11075 at 2292.300 kb on + strand, within ABID97_RS11075 at 2292.301 kb on - strand, within ABID97_RS11075 at 2292.762 kb on + strand at 2292.789 kb on + strand at 2292.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 2,289,733 + ABID97_RS11065 0.39 +0.0 2,290,472 - +0.7 2,290,485 - +1.7 2,291,337 + ABID97_RS11070 0.60 -1.3 2,291,799 - +0.4 2,292,300 + ABID97_RS11075 0.49 -0.4 2,292,300 + ABID97_RS11075 0.49 -1.2 2,292,301 - ABID97_RS11075 0.49 +0.3 2,292,762 + -0.5 2,292,789 + -0.4 2,292,831 + +0.6
Or see this region's nucleotide sequence