Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08220

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08210 and ABID97_RS08215 are separated by 174 nucleotidesABID97_RS08215 and ABID97_RS08220 are separated by 31 nucleotidesABID97_RS08220 and ABID97_RS08225 are separated by 104 nucleotides ABID97_RS08210: ABID97_RS08210 - MFS transporter, at 1,724,809 to 1,726,056 _RS08210 ABID97_RS08215: ABID97_RS08215 - hypothetical protein, at 1,726,231 to 1,726,761 _RS08215 ABID97_RS08220: ABID97_RS08220 - phosphoenolpyruvate carboxylase, at 1,726,793 to 1,729,639 _RS08220 ABID97_RS08225: ABID97_RS08225 - hydroxymethylbilane synthase, at 1,729,744 to 1,730,649 _RS08225 Position (kb) 1726 1727 1728 1729 1730Strain fitness (log2 ratio) -3 -2 -1 0 1at 1726.166 kb on + strandat 1726.679 kb on + strand, within ABID97_RS08215at 1726.680 kb on - strand, within ABID97_RS08215at 1726.926 kb on + strandat 1726.927 kb on - strandat 1727.173 kb on - strand, within ABID97_RS08220at 1727.173 kb on - strand, within ABID97_RS08220at 1727.415 kb on + strand, within ABID97_RS08220at 1727.416 kb on - strand, within ABID97_RS08220at 1727.599 kb on - strand, within ABID97_RS08220at 1727.859 kb on + strand, within ABID97_RS08220at 1727.925 kb on + strand, within ABID97_RS08220at 1727.925 kb on + strand, within ABID97_RS08220at 1727.925 kb on + strand, within ABID97_RS08220at 1727.926 kb on - strand, within ABID97_RS08220at 1727.926 kb on - strand, within ABID97_RS08220at 1727.926 kb on - strand, within ABID97_RS08220at 1727.926 kb on - strand, within ABID97_RS08220at 1727.926 kb on - strand, within ABID97_RS08220at 1728.102 kb on + strand, within ABID97_RS08220at 1728.496 kb on - strand, within ABID97_RS08220at 1728.574 kb on - strand, within ABID97_RS08220at 1728.574 kb on - strand, within ABID97_RS08220at 1728.574 kb on - strand, within ABID97_RS08220at 1728.709 kb on - strand, within ABID97_RS08220at 1728.709 kb on - strand, within ABID97_RS08220at 1728.709 kb on - strand, within ABID97_RS08220at 1728.709 kb on - strand, within ABID97_RS08220at 1728.726 kb on + strand, within ABID97_RS08220at 1728.726 kb on + strand, within ABID97_RS08220at 1728.727 kb on - strand, within ABID97_RS08220at 1728.766 kb on - strand, within ABID97_RS08220at 1728.894 kb on + strand, within ABID97_RS08220at 1728.895 kb on - strand, within ABID97_RS08220at 1728.930 kb on + strand, within ABID97_RS08220at 1728.930 kb on + strand, within ABID97_RS08220at 1728.931 kb on - strand, within ABID97_RS08220at 1728.933 kb on + strand, within ABID97_RS08220at 1728.933 kb on + strand, within ABID97_RS08220at 1728.933 kb on + strand, within ABID97_RS08220at 1728.934 kb on - strand, within ABID97_RS08220at 1729.081 kb on - strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.203 kb on + strand, within ABID97_RS08220at 1729.204 kb on - strand, within ABID97_RS08220at 1729.509 kb on + strandat 1729.510 kb on - strandat 1729.510 kb on - strandat 1729.701 kb on + strandat 1729.702 kb on - strandat 1729.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,726,166 + -1.5
1,726,679 + ABID97_RS08215 0.84 +0.2
1,726,680 - ABID97_RS08215 0.85 +0.7
1,726,926 + -1.1
1,726,927 - +0.1
1,727,173 - ABID97_RS08220 0.13 +0.1
1,727,173 - ABID97_RS08220 0.13 -0.9
1,727,415 + ABID97_RS08220 0.22 +0.7
1,727,416 - ABID97_RS08220 0.22 -2.8
1,727,599 - ABID97_RS08220 0.28 -0.9
1,727,859 + ABID97_RS08220 0.37 +0.4
1,727,925 + ABID97_RS08220 0.40 -3.6
1,727,925 + ABID97_RS08220 0.40 -1.4
1,727,925 + ABID97_RS08220 0.40 -0.9
1,727,926 - ABID97_RS08220 0.40 -1.5
1,727,926 - ABID97_RS08220 0.40 -0.2
1,727,926 - ABID97_RS08220 0.40 -1.3
1,727,926 - ABID97_RS08220 0.40 -0.3
1,727,926 - ABID97_RS08220 0.40 -1.6
1,728,102 + ABID97_RS08220 0.46 -0.7
1,728,496 - ABID97_RS08220 0.60 +0.6
1,728,574 - ABID97_RS08220 0.63 -0.1
1,728,574 - ABID97_RS08220 0.63 -0.4
1,728,574 - ABID97_RS08220 0.63 -2.3
1,728,709 - ABID97_RS08220 0.67 -1.0
1,728,709 - ABID97_RS08220 0.67 +0.7
1,728,709 - ABID97_RS08220 0.67 -1.2
1,728,709 - ABID97_RS08220 0.67 -1.5
1,728,726 + ABID97_RS08220 0.68 -0.6
1,728,726 + ABID97_RS08220 0.68 +0.4
1,728,727 - ABID97_RS08220 0.68 -1.4
1,728,766 - ABID97_RS08220 0.69 -1.0
1,728,894 + ABID97_RS08220 0.74 -1.0
1,728,895 - ABID97_RS08220 0.74 -2.7
1,728,930 + ABID97_RS08220 0.75 +0.3
1,728,930 + ABID97_RS08220 0.75 -1.0
1,728,931 - ABID97_RS08220 0.75 -0.9
1,728,933 + ABID97_RS08220 0.75 +0.3
1,728,933 + ABID97_RS08220 0.75 -0.7
1,728,933 + ABID97_RS08220 0.75 +1.4
1,728,934 - ABID97_RS08220 0.75 -0.3
1,729,081 - ABID97_RS08220 0.80 +0.7
1,729,203 + ABID97_RS08220 0.85 -0.6
1,729,203 + ABID97_RS08220 0.85 -0.7
1,729,203 + ABID97_RS08220 0.85 -1.9
1,729,203 + ABID97_RS08220 0.85 -1.7
1,729,203 + ABID97_RS08220 0.85 -1.6
1,729,204 - ABID97_RS08220 0.85 -1.9
1,729,509 + +0.1
1,729,510 - -2.1
1,729,510 - -1.7
1,729,701 + -0.5
1,729,702 - +1.7
1,729,752 + -0.4

Or see this region's nucleotide sequence