Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07770 and ABID97_RS07775 are separated by 165 nucleotides ABID97_RS07775 and ABID97_RS07780 are separated by 35 nucleotides ABID97_RS07780 and ABID97_RS07785 are separated by 35 nucleotides ABID97_RS07785 and ABID97_RS07790 are separated by 46 nucleotides
ABID97_RS07770: ABID97_RS07770 - acyl-CoA dehydrogenase family protein, at 1,633,712 to 1,634,893
_RS07770
ABID97_RS07775: ABID97_RS07775 - phosphoribosylglycinamide formyltransferase, at 1,635,059 to 1,635,655
_RS07775
ABID97_RS07780: ABID97_RS07780 - I78 family peptidase inhibitor, at 1,635,691 to 1,636,020
_RS07780
ABID97_RS07785: ABID97_RS07785 - DUF1653 domain-containing protein, at 1,636,056 to 1,636,289
_RS07785
ABID97_RS07790: ABID97_RS07790 - M48 family metalloprotease, at 1,636,336 to 1,638,189
_RS07790
Position (kb) 1635
1636 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1634.082 kb on + strand, within ABID97_RS07770 at 1634.083 kb on - strand, within ABID97_RS07770 at 1634.187 kb on + strand, within ABID97_RS07770 at 1634.187 kb on + strand, within ABID97_RS07770 at 1634.187 kb on + strand, within ABID97_RS07770 at 1634.188 kb on - strand, within ABID97_RS07770 at 1634.188 kb on - strand, within ABID97_RS07770 at 1634.188 kb on - strand, within ABID97_RS07770 at 1634.188 kb on - strand, within ABID97_RS07770 at 1634.442 kb on + strand, within ABID97_RS07770 at 1634.442 kb on + strand, within ABID97_RS07770 at 1634.442 kb on + strand, within ABID97_RS07770 at 1634.767 kb on + strand, within ABID97_RS07770 at 1634.767 kb on + strand, within ABID97_RS07770 at 1634.767 kb on + strand, within ABID97_RS07770 at 1634.767 kb on + strand, within ABID97_RS07770 at 1634.941 kb on + strand at 1634.941 kb on + strand at 1634.941 kb on + strand at 1634.941 kb on + strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1634.942 kb on - strand at 1635.045 kb on - strand at 1635.280 kb on - strand, within ABID97_RS07775 at 1635.280 kb on - strand, within ABID97_RS07775 at 1635.280 kb on - strand, within ABID97_RS07775 at 1635.603 kb on - strand at 1635.603 kb on - strand at 1635.663 kb on + strand at 1635.664 kb on - strand at 1635.664 kb on - strand at 1635.666 kb on - strand at 1635.666 kb on - strand at 1635.924 kb on + strand, within ABID97_RS07780 at 1635.925 kb on - strand, within ABID97_RS07780 at 1635.925 kb on - strand, within ABID97_RS07780 at 1635.925 kb on - strand, within ABID97_RS07780 at 1636.057 kb on + strand at 1636.058 kb on - strand at 1636.058 kb on - strand at 1636.162 kb on + strand, within ABID97_RS07785 at 1636.163 kb on - strand, within ABID97_RS07785 at 1636.217 kb on - strand, within ABID97_RS07785 at 1636.260 kb on + strand, within ABID97_RS07785
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,634,082 + ABID97_RS07770 0.31 +0.6 1,634,083 - ABID97_RS07770 0.31 -0.2 1,634,187 + ABID97_RS07770 0.40 +0.3 1,634,187 + ABID97_RS07770 0.40 +0.2 1,634,187 + ABID97_RS07770 0.40 -0.0 1,634,188 - ABID97_RS07770 0.40 -0.4 1,634,188 - ABID97_RS07770 0.40 -0.1 1,634,188 - ABID97_RS07770 0.40 +1.0 1,634,188 - ABID97_RS07770 0.40 -0.2 1,634,442 + ABID97_RS07770 0.62 +0.1 1,634,442 + ABID97_RS07770 0.62 -0.1 1,634,442 + ABID97_RS07770 0.62 -0.2 1,634,767 + ABID97_RS07770 0.89 -1.5 1,634,767 + ABID97_RS07770 0.89 +0.6 1,634,767 + ABID97_RS07770 0.89 +0.4 1,634,767 + ABID97_RS07770 0.89 -0.0 1,634,941 + -0.0 1,634,941 + +0.3 1,634,941 + +0.3 1,634,941 + -1.0 1,634,942 - +0.0 1,634,942 - -0.6 1,634,942 - +0.2 1,634,942 - -0.4 1,634,942 - +0.8 1,634,942 - -0.4 1,634,942 - +0.7 1,634,942 - +0.3 1,635,045 - -1.3 1,635,280 - ABID97_RS07775 0.37 -3.0 1,635,280 - ABID97_RS07775 0.37 -1.5 1,635,280 - ABID97_RS07775 0.37 -3.2 1,635,603 - -2.0 1,635,603 - -1.6 1,635,663 + +0.2 1,635,664 - +0.3 1,635,664 - +0.2 1,635,666 - -0.2 1,635,666 - +0.0 1,635,924 + ABID97_RS07780 0.71 -0.8 1,635,925 - ABID97_RS07780 0.71 -0.7 1,635,925 - ABID97_RS07780 0.71 -0.0 1,635,925 - ABID97_RS07780 0.71 -0.4 1,636,057 + -0.8 1,636,058 - -0.6 1,636,058 - -0.0 1,636,162 + ABID97_RS07785 0.45 -1.4 1,636,163 - ABID97_RS07785 0.46 +0.2 1,636,217 - ABID97_RS07785 0.69 -0.7 1,636,260 + ABID97_RS07785 0.87 -0.1
Or see this region's nucleotide sequence