Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07740 and ABID97_RS07745 are separated by 70 nucleotides ABID97_RS07745 and ABID97_RS07750 are separated by 13 nucleotides ABID97_RS07750 and ABID97_RS07755 are separated by 12 nucleotides ABID97_RS07755 and ABID97_RS07760 are separated by 10 nucleotides
ABID97_RS07740: ABID97_RS07740 - helix-turn-helix transcriptional regulator, at 1,629,392 to 1,629,592
_RS07740
ABID97_RS07745: ABID97_RS07745 - hypothetical protein, at 1,629,663 to 1,630,190
_RS07745
ABID97_RS07750: ABID97_RS07750 - IS630 family transposase, at 1,630,204 to 1,630,338
_RS07750
ABID97_RS07755: ABID97_RS07755 - enoyl-CoA hydratase, at 1,630,351 to 1,631,139
_RS07755
ABID97_RS07760: ABID97_RS07760 - alpha/beta fold hydrolase, at 1,631,150 to 1,632,502
_RS07760
Position (kb) 1630
1631
1632 Strain fitness (log2 ratio) -1
0
1
2
3 at 1629.416 kb on + strand, within ABID97_RS07740 at 1629.421 kb on + strand, within ABID97_RS07740 at 1629.421 kb on + strand, within ABID97_RS07740 at 1629.422 kb on - strand, within ABID97_RS07740 at 1629.458 kb on - strand, within ABID97_RS07740 at 1629.464 kb on + strand, within ABID97_RS07740 at 1629.540 kb on + strand, within ABID97_RS07740 at 1629.540 kb on + strand, within ABID97_RS07740 at 1629.540 kb on + strand, within ABID97_RS07740 at 1629.540 kb on + strand, within ABID97_RS07740 at 1629.541 kb on - strand, within ABID97_RS07740 at 1629.541 kb on - strand, within ABID97_RS07740 at 1629.567 kb on + strand, within ABID97_RS07740 at 1629.651 kb on + strand at 1629.651 kb on + strand at 1629.652 kb on - strand at 1629.748 kb on - strand, within ABID97_RS07745 at 1629.913 kb on + strand, within ABID97_RS07745 at 1630.087 kb on - strand, within ABID97_RS07745 at 1630.089 kb on + strand, within ABID97_RS07745 at 1630.090 kb on - strand, within ABID97_RS07745 at 1630.090 kb on - strand, within ABID97_RS07745 at 1630.252 kb on + strand, within ABID97_RS07750 at 1630.292 kb on + strand, within ABID97_RS07750 at 1630.487 kb on + strand, within ABID97_RS07755 at 1630.487 kb on + strand, within ABID97_RS07755 at 1630.487 kb on + strand, within ABID97_RS07755 at 1630.892 kb on + strand, within ABID97_RS07755 at 1630.892 kb on + strand, within ABID97_RS07755 at 1630.893 kb on - strand, within ABID97_RS07755 at 1630.893 kb on - strand, within ABID97_RS07755 at 1630.893 kb on - strand, within ABID97_RS07755 at 1630.896 kb on - strand, within ABID97_RS07755 at 1631.154 kb on + strand at 1631.154 kb on + strand at 1631.155 kb on - strand at 1631.155 kb on - strand at 1631.475 kb on + strand, within ABID97_RS07760 at 1631.475 kb on + strand, within ABID97_RS07760 at 1631.475 kb on + strand, within ABID97_RS07760 at 1631.475 kb on + strand, within ABID97_RS07760 at 1631.476 kb on - strand, within ABID97_RS07760 at 1631.476 kb on - strand, within ABID97_RS07760 at 1631.476 kb on - strand, within ABID97_RS07760 at 1631.520 kb on + strand, within ABID97_RS07760 at 1631.521 kb on - strand, within ABID97_RS07760 at 1631.905 kb on - strand, within ABID97_RS07760 at 1632.123 kb on + strand at 1632.123 kb on + strand, within ABID97_RS07760 at 1632.124 kb on - strand, within ABID97_RS07760 at 1632.124 kb on - strand, within ABID97_RS07760
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,629,416 + ABID97_RS07740 0.12 +0.3 1,629,421 + ABID97_RS07740 0.14 -0.5 1,629,421 + ABID97_RS07740 0.14 -0.7 1,629,422 - ABID97_RS07740 0.15 +1.0 1,629,458 - ABID97_RS07740 0.33 -1.1 1,629,464 + ABID97_RS07740 0.36 +0.3 1,629,540 + ABID97_RS07740 0.74 +0.0 1,629,540 + ABID97_RS07740 0.74 -0.1 1,629,540 + ABID97_RS07740 0.74 -0.6 1,629,540 + ABID97_RS07740 0.74 +0.7 1,629,541 - ABID97_RS07740 0.74 +1.0 1,629,541 - ABID97_RS07740 0.74 +0.5 1,629,567 + ABID97_RS07740 0.87 -0.9 1,629,651 + -0.1 1,629,651 + -0.4 1,629,652 - -0.0 1,629,748 - ABID97_RS07745 0.16 +0.4 1,629,913 + ABID97_RS07745 0.47 +0.4 1,630,087 - ABID97_RS07745 0.80 -0.6 1,630,089 + ABID97_RS07745 0.81 -0.7 1,630,090 - ABID97_RS07745 0.81 +0.1 1,630,090 - ABID97_RS07745 0.81 +0.1 1,630,252 + ABID97_RS07750 0.36 +1.0 1,630,292 + ABID97_RS07750 0.65 -0.2 1,630,487 + ABID97_RS07755 0.17 +0.1 1,630,487 + ABID97_RS07755 0.17 +0.7 1,630,487 + ABID97_RS07755 0.17 -0.1 1,630,892 + ABID97_RS07755 0.69 +0.5 1,630,892 + ABID97_RS07755 0.69 -1.1 1,630,893 - ABID97_RS07755 0.69 +0.2 1,630,893 - ABID97_RS07755 0.69 -0.2 1,630,893 - ABID97_RS07755 0.69 -0.1 1,630,896 - ABID97_RS07755 0.69 +1.1 1,631,154 + +1.2 1,631,154 + +0.2 1,631,155 - -0.3 1,631,155 - +0.7 1,631,475 + ABID97_RS07760 0.24 +0.1 1,631,475 + ABID97_RS07760 0.24 -1.4 1,631,475 + ABID97_RS07760 0.24 -0.5 1,631,475 + ABID97_RS07760 0.24 +0.6 1,631,476 - ABID97_RS07760 0.24 +0.3 1,631,476 - ABID97_RS07760 0.24 +0.0 1,631,476 - ABID97_RS07760 0.24 +1.2 1,631,520 + ABID97_RS07760 0.27 +0.5 1,631,521 - ABID97_RS07760 0.27 +0.9 1,631,905 - ABID97_RS07760 0.56 -0.2 1,632,123 + +3.6 1,632,123 + ABID97_RS07760 0.72 -0.0 1,632,124 - ABID97_RS07760 0.72 +0.2 1,632,124 - ABID97_RS07760 0.72 +0.0
Or see this region's nucleotide sequence