Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05365

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS05360 and ABID97_RS05365 overlap by 20 nucleotidesABID97_RS05365 and ABID97_RS05370 overlap by 4 nucleotides ABID97_RS05360: ABID97_RS05360 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 1,122,786 to 1,124,162 _RS05360 ABID97_RS05365: ABID97_RS05365 - DUF4390 domain-containing protein, at 1,124,143 to 1,124,790 _RS05365 ABID97_RS05370: ABID97_RS05370 - ATP-binding protein, at 1,124,787 to 1,127,117 _RS05370 Position (kb) 1124 1125Strain fitness (log2 ratio) -2 -1 0 1 2at 1123.390 kb on - strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.962 kb on + strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1123.963 kb on - strand, within ABID97_RS05360at 1124.314 kb on + strand, within ABID97_RS05365at 1124.314 kb on + strand, within ABID97_RS05365at 1124.314 kb on + strand, within ABID97_RS05365at 1124.315 kb on - strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.386 kb on + strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.387 kb on - strand, within ABID97_RS05365at 1124.425 kb on + strand, within ABID97_RS05365at 1124.425 kb on + strand, within ABID97_RS05365at 1124.476 kb on + strand, within ABID97_RS05365at 1124.943 kb on + strandat 1124.952 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1124.955 kb on + strandat 1125.130 kb on - strand, within ABID97_RS05370at 1125.130 kb on - strand, within ABID97_RS05370at 1125.130 kb on - strand, within ABID97_RS05370at 1125.141 kb on + strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.142 kb on - strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.711 kb on + strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370at 1125.712 kb on - strand, within ABID97_RS05370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
1,123,390 - ABID97_RS05360 0.44 +0.7
1,123,962 + ABID97_RS05360 0.85 -0.1
1,123,962 + ABID97_RS05360 0.85 +0.3
1,123,962 + ABID97_RS05360 0.85 -0.6
1,123,962 + ABID97_RS05360 0.85 -0.2
1,123,963 - ABID97_RS05360 0.85 -0.8
1,123,963 - ABID97_RS05360 0.85 +0.8
1,123,963 - ABID97_RS05360 0.85 -0.1
1,124,314 + ABID97_RS05365 0.26 +0.7
1,124,314 + ABID97_RS05365 0.26 -1.5
1,124,314 + ABID97_RS05365 0.26 +1.8
1,124,315 - ABID97_RS05365 0.27 -0.0
1,124,386 + ABID97_RS05365 0.38 +0.5
1,124,386 + ABID97_RS05365 0.38 -0.5
1,124,386 + ABID97_RS05365 0.38 -0.1
1,124,386 + ABID97_RS05365 0.38 -1.2
1,124,387 - ABID97_RS05365 0.38 +0.2
1,124,387 - ABID97_RS05365 0.38 +0.5
1,124,387 - ABID97_RS05365 0.38 -0.2
1,124,425 + ABID97_RS05365 0.44 -0.8
1,124,425 + ABID97_RS05365 0.44 +0.4
1,124,476 + ABID97_RS05365 0.51 -1.4
1,124,943 + -0.4
1,124,952 + +0.7
1,124,955 + +0.1
1,124,955 + -0.6
1,124,955 + +2.0
1,124,955 + +0.7
1,124,955 + -0.6
1,124,955 + +1.0
1,124,955 + +0.2
1,124,955 + +0.3
1,124,955 + +1.4
1,124,955 + +0.2
1,124,955 + -1.1
1,125,130 - ABID97_RS05370 0.15 -1.3
1,125,130 - ABID97_RS05370 0.15 -0.8
1,125,130 - ABID97_RS05370 0.15 +0.8
1,125,141 + ABID97_RS05370 0.15 +0.5
1,125,142 - ABID97_RS05370 0.15 -1.3
1,125,142 - ABID97_RS05370 0.15 +0.5
1,125,142 - ABID97_RS05370 0.15 +0.2
1,125,711 + ABID97_RS05370 0.40 -0.5
1,125,711 + ABID97_RS05370 0.40 -1.8
1,125,711 + ABID97_RS05370 0.40 +0.8
1,125,711 + ABID97_RS05370 0.40 +0.6
1,125,711 + ABID97_RS05370 0.40 -0.6
1,125,711 + ABID97_RS05370 0.40 -1.0
1,125,712 - ABID97_RS05370 0.40 -0.4
1,125,712 - ABID97_RS05370 0.40 -1.6
1,125,712 - ABID97_RS05370 0.40 +1.0
1,125,712 - ABID97_RS05370 0.40 +0.0
1,125,712 - ABID97_RS05370 0.40 +0.6
1,125,712 - ABID97_RS05370 0.40 -1.1

Or see this region's nucleotide sequence