Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05250

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05240 and ABID97_RS05245 are separated by 15 nucleotidesABID97_RS05245 and ABID97_RS05250 are separated by 326 nucleotidesABID97_RS05250 and ABID97_RS05255 overlap by 4 nucleotidesABID97_RS05255 and ABID97_RS05260 overlap by 4 nucleotidesABID97_RS05260 and ABID97_RS05265 are separated by 5 nucleotides ABID97_RS05240: ABID97_RS05240 - phosphoglycolate phosphatase, at 1,099,396 to 1,100,112 _RS05240 ABID97_RS05245: ABID97_RS05245 - chalcone isomerase family protein, at 1,100,128 to 1,100,733 _RS05245 ABID97_RS05250: ABID97_RS05250 - anthranilate synthase component I, at 1,101,060 to 1,102,562 _RS05250 ABID97_RS05255: ABID97_RS05255 - GxxExxY protein, at 1,102,559 to 1,102,951 _RS05255 ABID97_RS05260: ABID97_RS05260 - aminodeoxychorismate/anthranilate synthase component II, at 1,102,948 to 1,103,532 _RS05260 ABID97_RS05265: ABID97_RS05265 - low-specificity L-threonine aldolase, at 1,103,538 to 1,104,596 _RS05265 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1100.525 kb on + strand, within ABID97_RS05245at 1100.525 kb on + strand, within ABID97_RS05245at 1100.526 kb on - strand, within ABID97_RS05245at 1100.526 kb on - strand, within ABID97_RS05245at 1100.526 kb on - strand, within ABID97_RS05245at 1100.526 kb on - strand, within ABID97_RS05245at 1100.541 kb on - strand, within ABID97_RS05245at 1100.926 kb on + strandat 1100.926 kb on + strandat 1100.926 kb on + strandat 1100.926 kb on + strandat 1100.926 kb on + strandat 1100.926 kb on + strandat 1100.927 kb on - strandat 1100.927 kb on - strandat 1100.927 kb on - strandat 1101.102 kb on + strandat 1101.102 kb on + strandat 1101.102 kb on + strandat 1101.381 kb on + strand, within ABID97_RS05250at 1101.382 kb on - strand, within ABID97_RS05250at 1101.447 kb on + strand, within ABID97_RS05250at 1101.585 kb on + strand, within ABID97_RS05250at 1101.586 kb on - strand, within ABID97_RS05250at 1101.598 kb on - strand, within ABID97_RS05250at 1101.598 kb on - strand, within ABID97_RS05250at 1101.744 kb on + strand, within ABID97_RS05250at 1101.745 kb on - strand, within ABID97_RS05250at 1101.745 kb on - strand, within ABID97_RS05250at 1101.745 kb on - strand, within ABID97_RS05250at 1101.856 kb on - strand, within ABID97_RS05250at 1101.888 kb on + strand, within ABID97_RS05250at 1101.889 kb on - strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.894 kb on + strand, within ABID97_RS05250at 1101.895 kb on - strand, within ABID97_RS05250at 1101.895 kb on - strand, within ABID97_RS05250at 1101.895 kb on - strand, within ABID97_RS05250at 1101.895 kb on - strand, within ABID97_RS05250at 1101.896 kb on - strand, within ABID97_RS05250at 1101.897 kb on + strand, within ABID97_RS05250at 1101.897 kb on + strand, within ABID97_RS05250at 1101.898 kb on - strand, within ABID97_RS05250at 1101.901 kb on - strand, within ABID97_RS05250at 1101.901 kb on - strand, within ABID97_RS05250at 1102.350 kb on + strand, within ABID97_RS05250at 1102.369 kb on - strand, within ABID97_RS05250at 1102.378 kb on - strand, within ABID97_RS05250at 1102.378 kb on - strand, within ABID97_RS05250at 1102.378 kb on - strand, within ABID97_RS05250at 1102.736 kb on + strand, within ABID97_RS05255at 1102.736 kb on + strand, within ABID97_RS05255at 1102.736 kb on + strand, within ABID97_RS05255at 1102.736 kb on + strand, within ABID97_RS05255at 1102.736 kb on + strand, within ABID97_RS05255at 1102.737 kb on - strand, within ABID97_RS05255at 1102.763 kb on + strand, within ABID97_RS05255at 1102.763 kb on + strand, within ABID97_RS05255at 1102.764 kb on - strand, within ABID97_RS05255at 1102.987 kb on + strandat 1102.988 kb on - strandat 1103.338 kb on + strand, within ABID97_RS05260

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,100,525 + ABID97_RS05245 0.66 +1.4
1,100,525 + ABID97_RS05245 0.66 -0.6
1,100,526 - ABID97_RS05245 0.66 -0.5
1,100,526 - ABID97_RS05245 0.66 -0.4
1,100,526 - ABID97_RS05245 0.66 +0.4
1,100,526 - ABID97_RS05245 0.66 +0.4
1,100,541 - ABID97_RS05245 0.68 +0.2
1,100,926 + +0.6
1,100,926 + +1.5
1,100,926 + -0.6
1,100,926 + -1.2
1,100,926 + +0.2
1,100,926 + -0.4
1,100,927 - +0.3
1,100,927 - -0.1
1,100,927 - -0.2
1,101,102 + -3.5
1,101,102 + +0.0
1,101,102 + -1.0
1,101,381 + ABID97_RS05250 0.21 -2.4
1,101,382 - ABID97_RS05250 0.21 -1.9
1,101,447 + ABID97_RS05250 0.26 -3.5
1,101,585 + ABID97_RS05250 0.35 -3.1
1,101,586 - ABID97_RS05250 0.35 -3.5
1,101,598 - ABID97_RS05250 0.36 -2.7
1,101,598 - ABID97_RS05250 0.36 -2.8
1,101,744 + ABID97_RS05250 0.46 -2.1
1,101,745 - ABID97_RS05250 0.46 -2.0
1,101,745 - ABID97_RS05250 0.46 -0.1
1,101,745 - ABID97_RS05250 0.46 +0.6
1,101,856 - ABID97_RS05250 0.53 -3.8
1,101,888 + ABID97_RS05250 0.55 -2.6
1,101,889 - ABID97_RS05250 0.55 -2.0
1,101,894 + ABID97_RS05250 0.55 -2.6
1,101,894 + ABID97_RS05250 0.55 -2.4
1,101,894 + ABID97_RS05250 0.55 -1.8
1,101,894 + ABID97_RS05250 0.55 -0.8
1,101,894 + ABID97_RS05250 0.55 -1.0
1,101,894 + ABID97_RS05250 0.55 -2.2
1,101,894 + ABID97_RS05250 0.55 -1.2
1,101,894 + ABID97_RS05250 0.55 -1.7
1,101,894 + ABID97_RS05250 0.55 -0.5
1,101,894 + ABID97_RS05250 0.55 -1.7
1,101,895 - ABID97_RS05250 0.56 -1.2
1,101,895 - ABID97_RS05250 0.56 +0.3
1,101,895 - ABID97_RS05250 0.56 +0.0
1,101,895 - ABID97_RS05250 0.56 -1.5
1,101,896 - ABID97_RS05250 0.56 +0.6
1,101,897 + ABID97_RS05250 0.56 -0.5
1,101,897 + ABID97_RS05250 0.56 -1.8
1,101,898 - ABID97_RS05250 0.56 -0.2
1,101,901 - ABID97_RS05250 0.56 -0.8
1,101,901 - ABID97_RS05250 0.56 -1.5
1,102,350 + ABID97_RS05250 0.86 -0.2
1,102,369 - ABID97_RS05250 0.87 -0.7
1,102,378 - ABID97_RS05250 0.88 -0.5
1,102,378 - ABID97_RS05250 0.88 -1.2
1,102,378 - ABID97_RS05250 0.88 -0.3
1,102,736 + ABID97_RS05255 0.45 +0.4
1,102,736 + ABID97_RS05255 0.45 +0.4
1,102,736 + ABID97_RS05255 0.45 -0.7
1,102,736 + ABID97_RS05255 0.45 +0.6
1,102,736 + ABID97_RS05255 0.45 -0.0
1,102,737 - ABID97_RS05255 0.45 -1.9
1,102,763 + ABID97_RS05255 0.52 +1.4
1,102,763 + ABID97_RS05255 0.52 -0.1
1,102,764 - ABID97_RS05255 0.52 +0.3
1,102,987 + -1.4
1,102,988 - -1.8
1,103,338 + ABID97_RS05260 0.67 -3.2

Or see this region's nucleotide sequence