Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04695 and ABID97_RS04700 overlap by 8 nucleotides ABID97_RS04700 and ABID97_RS04705 overlap by 4 nucleotides ABID97_RS04705 and ABID97_RS04710 are separated by 47 nucleotides
ABID97_RS04695: ABID97_RS04695 - hypothetical protein, at 978,583 to 978,711
_RS04695
ABID97_RS04700: ABID97_RS04700 - hypothetical protein, at 978,704 to 979,468
_RS04700
ABID97_RS04705: ABID97_RS04705 - MFS transporter, at 979,465 to 980,691
_RS04705
ABID97_RS04710: ABID97_RS04710 - malate synthase G, at 980,739 to 982,913
_RS04710
Position (kb) 979
980
981 Strain fitness (log2 ratio) -2
-1
0
1 at 978.914 kb on + strand, within ABID97_RS04700 at 978.915 kb on - strand, within ABID97_RS04700 at 978.915 kb on - strand, within ABID97_RS04700 at 978.915 kb on - strand, within ABID97_RS04700 at 979.388 kb on + strand, within ABID97_RS04700 at 979.389 kb on - strand, within ABID97_RS04700 at 979.389 kb on - strand, within ABID97_RS04700 at 979.389 kb on - strand, within ABID97_RS04700 at 979.389 kb on - strand, within ABID97_RS04700 at 979.577 kb on + strand at 979.577 kb on + strand at 979.718 kb on + strand, within ABID97_RS04705 at 979.718 kb on + strand, within ABID97_RS04705 at 979.725 kb on - strand, within ABID97_RS04705 at 980.022 kb on - strand, within ABID97_RS04705 at 980.791 kb on + strand at 980.842 kb on + strand at 980.881 kb on + strand at 980.881 kb on + strand at 981.095 kb on - strand, within ABID97_RS04710 at 981.095 kb on - strand, within ABID97_RS04710 at 981.269 kb on - strand, within ABID97_RS04710
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 978,914 + ABID97_RS04700 0.27 -0.5 978,915 - ABID97_RS04700 0.28 +0.2 978,915 - ABID97_RS04700 0.28 -0.2 978,915 - ABID97_RS04700 0.28 +0.0 979,388 + ABID97_RS04700 0.89 -0.6 979,389 - ABID97_RS04700 0.90 -0.2 979,389 - ABID97_RS04700 0.90 -0.3 979,389 - ABID97_RS04700 0.90 -0.0 979,389 - ABID97_RS04700 0.90 +1.1 979,577 + +0.7 979,577 + -0.4 979,718 + ABID97_RS04705 0.21 -2.1 979,718 + ABID97_RS04705 0.21 -0.3 979,725 - ABID97_RS04705 0.21 +0.5 980,022 - ABID97_RS04705 0.45 -0.8 980,791 + +0.3 980,842 + +0.7 980,881 + -1.0 980,881 + +0.1 981,095 - ABID97_RS04710 0.16 -0.4 981,095 - ABID97_RS04710 0.16 -0.2 981,269 - ABID97_RS04710 0.24 -0.3
Or see this region's nucleotide sequence