Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04610 and ABID97_RS04615 are separated by 20 nucleotides ABID97_RS04615 and ABID97_RS04620 are separated by 10 nucleotides ABID97_RS04620 and ABID97_RS04625 are separated by 117 nucleotides
ABID97_RS04610: ABID97_RS04610 - potassium transporter Kup, at 960,662 to 962,533
_RS04610
ABID97_RS04615: ABID97_RS04615 - polysaccharide deacetylase family protein, at 962,554 to 963,477
_RS04615
ABID97_RS04620: ABID97_RS04620 - nuclear transport factor 2 family protein, at 963,488 to 963,925
_RS04620
ABID97_RS04625: ABID97_RS04625 - benzoate/H(+) symporter BenE family transporter, at 964,043 to 965,308
_RS04625
Position (kb) 962
963
964 Strain fitness (log2 ratio) -1
0
1
2 at 961.676 kb on + strand, within ABID97_RS04610 at 961.677 kb on - strand, within ABID97_RS04610 at 961.763 kb on + strand, within ABID97_RS04610 at 961.763 kb on + strand, within ABID97_RS04610 at 962.369 kb on + strand at 962.369 kb on + strand at 962.370 kb on - strand at 962.370 kb on - strand at 962.392 kb on + strand at 962.711 kb on + strand, within ABID97_RS04615 at 962.711 kb on + strand, within ABID97_RS04615 at 962.711 kb on + strand, within ABID97_RS04615 at 962.712 kb on - strand, within ABID97_RS04615 at 962.712 kb on - strand, within ABID97_RS04615 at 962.937 kb on - strand, within ABID97_RS04615 at 962.942 kb on + strand, within ABID97_RS04615 at 963.176 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.369 kb on - strand, within ABID97_RS04615 at 963.402 kb on - strand at 963.428 kb on + strand at 963.429 kb on - strand at 963.579 kb on + strand, within ABID97_RS04620 at 963.591 kb on + strand, within ABID97_RS04620 at 963.591 kb on + strand, within ABID97_RS04620 at 963.592 kb on - strand, within ABID97_RS04620 at 963.633 kb on + strand, within ABID97_RS04620 at 963.633 kb on + strand, within ABID97_RS04620 at 963.634 kb on - strand, within ABID97_RS04620 at 963.652 kb on - strand, within ABID97_RS04620 at 963.652 kb on - strand, within ABID97_RS04620 at 963.723 kb on + strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.810 kb on + strand, within ABID97_RS04620 at 963.810 kb on + strand, within ABID97_RS04620 at 963.811 kb on - strand, within ABID97_RS04620 at 964.308 kb on - strand, within ABID97_RS04625 at 964.308 kb on - strand, within ABID97_RS04625 at 964.308 kb on - strand, within ABID97_RS04625
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 961,676 + ABID97_RS04610 0.54 +2.1 961,677 - ABID97_RS04610 0.54 +0.3 961,763 + ABID97_RS04610 0.59 -0.6 961,763 + ABID97_RS04610 0.59 +0.7 962,369 + -0.9 962,369 + -1.2 962,370 - -1.2 962,370 - -1.5 962,392 + -0.5 962,711 + ABID97_RS04615 0.17 +0.6 962,711 + ABID97_RS04615 0.17 +0.5 962,711 + ABID97_RS04615 0.17 +0.5 962,712 - ABID97_RS04615 0.17 +0.5 962,712 - ABID97_RS04615 0.17 -0.2 962,937 - ABID97_RS04615 0.41 +0.1 962,942 + ABID97_RS04615 0.42 -0.1 963,176 + ABID97_RS04615 0.67 +0.2 963,368 + ABID97_RS04615 0.88 -0.0 963,368 + ABID97_RS04615 0.88 -0.3 963,368 + ABID97_RS04615 0.88 +0.1 963,368 + ABID97_RS04615 0.88 +0.1 963,369 - ABID97_RS04615 0.88 -1.7 963,402 - -0.1 963,428 + -0.6 963,429 - +0.4 963,579 + ABID97_RS04620 0.21 +0.2 963,591 + ABID97_RS04620 0.24 -0.6 963,591 + ABID97_RS04620 0.24 +0.4 963,592 - ABID97_RS04620 0.24 -1.0 963,633 + ABID97_RS04620 0.33 +0.1 963,633 + ABID97_RS04620 0.33 -0.1 963,634 - ABID97_RS04620 0.33 -1.0 963,652 - ABID97_RS04620 0.37 +0.2 963,652 - ABID97_RS04620 0.37 +0.7 963,723 + ABID97_RS04620 0.54 -0.1 963,724 - ABID97_RS04620 0.54 +1.6 963,724 - ABID97_RS04620 0.54 -0.1 963,724 - ABID97_RS04620 0.54 -0.4 963,810 + ABID97_RS04620 0.74 -0.5 963,810 + ABID97_RS04620 0.74 -0.1 963,811 - ABID97_RS04620 0.74 -0.3 964,308 - ABID97_RS04625 0.21 -0.4 964,308 - ABID97_RS04625 0.21 +0.3 964,308 - ABID97_RS04625 0.21 +0.3
Or see this region's nucleotide sequence