Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04255 and ABID97_RS04260 are separated by 71 nucleotides ABID97_RS04260 and ABID97_RS04265 are separated by 22 nucleotides ABID97_RS04265 and ABID97_RS04270 are separated by 66 nucleotides
ABID97_RS04255: ABID97_RS04255 - gentisate 1,2-dioxygenase, at 873,955 to 875,034
_RS04255
ABID97_RS04260: ABID97_RS04260 - fumarylacetoacetate hydrolase family protein, at 875,106 to 875,813
_RS04260
ABID97_RS04265: ABID97_RS04265 - 3-hydroxybenzoate 6-monooxygenase, at 875,836 to 877,089
_RS04265
ABID97_RS04270: ABID97_RS04270 - tripartite tricarboxylate transporter substrate binding protein, at 877,156 to 878,139
_RS04270
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -1
0
1 at 875.205 kb on + strand, within ABID97_RS04260 at 875.206 kb on - strand, within ABID97_RS04260 at 875.206 kb on - strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.349 kb on + strand, within ABID97_RS04260 at 875.350 kb on - strand, within ABID97_RS04260 at 875.351 kb on - strand, within ABID97_RS04260 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.529 kb on + strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.530 kb on - strand, within ABID97_RS04265 at 876.610 kb on + strand, within ABID97_RS04265 at 876.610 kb on + strand, within ABID97_RS04265 at 876.760 kb on + strand, within ABID97_RS04265 at 876.859 kb on + strand, within ABID97_RS04265 at 876.860 kb on - strand, within ABID97_RS04265 at 876.926 kb on - strand, within ABID97_RS04265 at 876.994 kb on + strand at 876.994 kb on + strand at 876.994 kb on + strand at 877.015 kb on + strand at 877.015 kb on + strand at 877.159 kb on + strand at 877.160 kb on - strand at 877.160 kb on - strand at 877.160 kb on - strand at 877.474 kb on + strand, within ABID97_RS04270 at 877.474 kb on + strand, within ABID97_RS04270 at 877.475 kb on - strand, within ABID97_RS04270 at 877.475 kb on - strand, within ABID97_RS04270 at 877.628 kb on - strand, within ABID97_RS04270 at 877.801 kb on + strand, within ABID97_RS04270 at 877.801 kb on + strand, within ABID97_RS04270 at 877.802 kb on - strand, within ABID97_RS04270 at 877.802 kb on - strand, within ABID97_RS04270 at 877.802 kb on - strand, within ABID97_RS04270 at 877.823 kb on - strand, within ABID97_RS04270
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 875,205 + ABID97_RS04260 0.14 -0.3 875,206 - ABID97_RS04260 0.14 -0.3 875,206 - ABID97_RS04260 0.14 -0.5 875,349 + ABID97_RS04260 0.34 -0.3 875,349 + ABID97_RS04260 0.34 +0.3 875,349 + ABID97_RS04260 0.34 -0.4 875,349 + ABID97_RS04260 0.34 -0.7 875,349 + ABID97_RS04260 0.34 +0.7 875,350 - ABID97_RS04260 0.34 -0.5 875,351 - ABID97_RS04260 0.35 +0.4 876,529 + ABID97_RS04265 0.55 -0.6 876,529 + ABID97_RS04265 0.55 +0.4 876,529 + ABID97_RS04265 0.55 -0.6 876,529 + ABID97_RS04265 0.55 +0.3 876,529 + ABID97_RS04265 0.55 -0.1 876,530 - ABID97_RS04265 0.55 +0.8 876,530 - ABID97_RS04265 0.55 +0.2 876,530 - ABID97_RS04265 0.55 -0.2 876,530 - ABID97_RS04265 0.55 -0.0 876,530 - ABID97_RS04265 0.55 -0.2 876,610 + ABID97_RS04265 0.62 -0.2 876,610 + ABID97_RS04265 0.62 -0.1 876,760 + ABID97_RS04265 0.74 -0.4 876,859 + ABID97_RS04265 0.82 -0.1 876,860 - ABID97_RS04265 0.82 -0.6 876,926 - ABID97_RS04265 0.87 -0.4 876,994 + -0.2 876,994 + -0.1 876,994 + -0.6 877,015 + +0.7 877,015 + +0.6 877,159 + +0.1 877,160 - -0.2 877,160 - -0.4 877,160 - +1.7 877,474 + ABID97_RS04270 0.32 -0.5 877,474 + ABID97_RS04270 0.32 -0.1 877,475 - ABID97_RS04270 0.32 -0.1 877,475 - ABID97_RS04270 0.32 +0.7 877,628 - ABID97_RS04270 0.48 +0.0 877,801 + ABID97_RS04270 0.66 +0.1 877,801 + ABID97_RS04270 0.66 +0.3 877,802 - ABID97_RS04270 0.66 -0.7 877,802 - ABID97_RS04270 0.66 -0.2 877,802 - ABID97_RS04270 0.66 +0.3 877,823 - ABID97_RS04270 0.68 -0.9
Or see this region's nucleotide sequence