Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04165 and ABID97_RS04170 are separated by 121 nucleotides ABID97_RS04170 and ABID97_RS04175 are separated by 31 nucleotides
ABID97_RS04165: ABID97_RS04165 - hypothetical protein, at 855,388 to 857,046
_RS04165
ABID97_RS04170: ABID97_RS04170 - DUF445 domain-containing protein, at 857,168 to 858,391
_RS04170
ABID97_RS04175: ABID97_RS04175 - acetylornithine deacetylase, at 858,423 to 859,589
_RS04175
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.223 kb on + strand at 856.223 kb on + strand, within ABID97_RS04165 at 856.223 kb on + strand, within ABID97_RS04165 at 856.223 kb on + strand, within ABID97_RS04165 at 856.224 kb on - strand, within ABID97_RS04165 at 856.598 kb on + strand, within ABID97_RS04165 at 856.598 kb on + strand, within ABID97_RS04165 at 856.599 kb on - strand, within ABID97_RS04165 at 856.608 kb on + strand, within ABID97_RS04165 at 856.609 kb on - strand, within ABID97_RS04165 at 856.712 kb on + strand, within ABID97_RS04165 at 856.713 kb on - strand, within ABID97_RS04165 at 856.713 kb on - strand, within ABID97_RS04165 at 856.827 kb on + strand, within ABID97_RS04165 at 856.827 kb on + strand, within ABID97_RS04165 at 856.828 kb on - strand, within ABID97_RS04165 at 857.082 kb on + strand at 857.082 kb on + strand at 857.538 kb on + strand, within ABID97_RS04170 at 857.538 kb on + strand, within ABID97_RS04170 at 857.539 kb on - strand, within ABID97_RS04170 at 857.763 kb on + strand, within ABID97_RS04170 at 857.764 kb on - strand, within ABID97_RS04170 at 857.764 kb on - strand, within ABID97_RS04170 at 858.300 kb on + strand at 858.301 kb on - strand at 858.301 kb on - strand at 858.345 kb on + strand at 858.345 kb on + strand at 858.346 kb on - strand at 858.346 kb on - strand at 858.346 kb on - strand at 858.751 kb on + strand, within ABID97_RS04175 at 859.049 kb on - strand, within ABID97_RS04175 at 859.181 kb on - strand, within ABID97_RS04175 at 859.181 kb on - strand, within ABID97_RS04175 at 859.288 kb on + strand, within ABID97_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 856,223 + +2.7 856,223 + ABID97_RS04165 0.50 +0.1 856,223 + ABID97_RS04165 0.50 +0.2 856,223 + ABID97_RS04165 0.50 -0.8 856,224 - ABID97_RS04165 0.50 +0.2 856,598 + ABID97_RS04165 0.73 -0.3 856,598 + ABID97_RS04165 0.73 +0.1 856,599 - ABID97_RS04165 0.73 -0.5 856,608 + ABID97_RS04165 0.74 +1.7 856,609 - ABID97_RS04165 0.74 +0.1 856,712 + ABID97_RS04165 0.80 +0.1 856,713 - ABID97_RS04165 0.80 +0.4 856,713 - ABID97_RS04165 0.80 -0.1 856,827 + ABID97_RS04165 0.87 -0.0 856,827 + ABID97_RS04165 0.87 +1.5 856,828 - ABID97_RS04165 0.87 +0.5 857,082 + +0.1 857,082 + +0.1 857,538 + ABID97_RS04170 0.30 -0.2 857,538 + ABID97_RS04170 0.30 +0.1 857,539 - ABID97_RS04170 0.30 +0.0 857,763 + ABID97_RS04170 0.49 -0.5 857,764 - ABID97_RS04170 0.49 -1.0 857,764 - ABID97_RS04170 0.49 -0.5 858,300 + +0.1 858,301 - -0.1 858,301 - -1.9 858,345 + -0.0 858,345 + +0.2 858,346 - +0.6 858,346 - -0.3 858,346 - -0.5 858,751 + ABID97_RS04175 0.28 -0.0 859,049 - ABID97_RS04175 0.54 +0.2 859,181 - ABID97_RS04175 0.65 +0.0 859,181 - ABID97_RS04175 0.65 -0.5 859,288 + ABID97_RS04175 0.74 +0.2
Or see this region's nucleotide sequence