Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03900 and ABID97_RS03905 are separated by 6 nucleotides ABID97_RS03905 and ABID97_RS03910 are separated by 12 nucleotides ABID97_RS03910 and ABID97_RS03915 are separated by 9 nucleotides ABID97_RS03915 and ABID97_RS03920 are separated by 109 nucleotides
ABID97_RS03900: ABID97_RS03900 - GntR family transcriptional regulator, at 799,749 to 800,522
_RS03900
ABID97_RS03905: ABID97_RS03905 - exodeoxyribonuclease III, at 800,529 to 801,332
_RS03905
ABID97_RS03910: ABID97_RS03910 - orotate phosphoribosyltransferase, at 801,345 to 802,028
_RS03910
ABID97_RS03915: ABID97_RS03915 - DUF4124 domain-containing protein, at 802,038 to 802,730
_RS03915
ABID97_RS03920: ABID97_RS03920 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 802,840 to 804,330
_RS03920
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.358 kb on + strand, within ABID97_RS03900 at 800.359 kb on - strand, within ABID97_RS03900 at 800.359 kb on - strand, within ABID97_RS03900 at 800.545 kb on + strand at 800.545 kb on + strand at 800.546 kb on - strand at 800.590 kb on + strand at 800.591 kb on - strand at 800.642 kb on - strand, within ABID97_RS03905 at 800.671 kb on + strand, within ABID97_RS03905 at 800.701 kb on + strand, within ABID97_RS03905 at 800.701 kb on + strand, within ABID97_RS03905 at 800.701 kb on + strand, within ABID97_RS03905 at 800.702 kb on - strand, within ABID97_RS03905 at 800.702 kb on - strand, within ABID97_RS03905 at 800.702 kb on - strand, within ABID97_RS03905 at 800.702 kb on - strand, within ABID97_RS03905 at 800.995 kb on + strand, within ABID97_RS03905 at 800.995 kb on + strand, within ABID97_RS03905 at 800.996 kb on - strand, within ABID97_RS03905 at 800.996 kb on - strand, within ABID97_RS03905 at 800.996 kb on - strand, within ABID97_RS03905 at 800.996 kb on - strand, within ABID97_RS03905 at 801.049 kb on + strand, within ABID97_RS03905 at 801.049 kb on + strand, within ABID97_RS03905 at 801.092 kb on + strand, within ABID97_RS03905 at 801.093 kb on - strand, within ABID97_RS03905 at 801.093 kb on - strand, within ABID97_RS03905 at 801.093 kb on - strand, within ABID97_RS03905 at 801.118 kb on + strand, within ABID97_RS03905 at 801.119 kb on - strand, within ABID97_RS03905 at 801.119 kb on - strand, within ABID97_RS03905 at 801.163 kb on + strand, within ABID97_RS03905 at 801.164 kb on - strand, within ABID97_RS03905 at 801.164 kb on - strand, within ABID97_RS03905 at 801.164 kb on - strand, within ABID97_RS03905 at 801.240 kb on - strand, within ABID97_RS03905 at 801.240 kb on - strand, within ABID97_RS03905 at 801.352 kb on + strand at 801.352 kb on + strand at 801.352 kb on + strand at 801.353 kb on - strand at 801.353 kb on - strand at 801.353 kb on - strand at 801.353 kb on - strand at 801.353 kb on - strand at 801.462 kb on + strand, within ABID97_RS03910 at 801.522 kb on + strand, within ABID97_RS03910 at 801.522 kb on + strand, within ABID97_RS03910 at 801.579 kb on + strand, within ABID97_RS03910 at 801.639 kb on + strand, within ABID97_RS03910 at 801.946 kb on - strand, within ABID97_RS03910 at 802.176 kb on + strand, within ABID97_RS03915 at 802.176 kb on + strand, within ABID97_RS03915 at 802.176 kb on + strand, within ABID97_RS03915 at 802.177 kb on - strand, within ABID97_RS03915 at 802.299 kb on + strand, within ABID97_RS03915 at 802.299 kb on + strand, within ABID97_RS03915 at 802.300 kb on - strand, within ABID97_RS03915 at 802.543 kb on - strand, within ABID97_RS03915 at 802.543 kb on - strand, within ABID97_RS03915 at 802.543 kb on - strand, within ABID97_RS03915 at 802.729 kb on - strand at 802.729 kb on - strand at 802.729 kb on - strand at 802.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 800,358 + ABID97_RS03900 0.79 -0.6 800,359 - ABID97_RS03900 0.79 -0.9 800,359 - ABID97_RS03900 0.79 -0.2 800,545 + +0.2 800,545 + +0.1 800,546 - +0.8 800,590 + -0.1 800,591 - -0.2 800,642 - ABID97_RS03905 0.14 -0.4 800,671 + ABID97_RS03905 0.18 +0.4 800,701 + ABID97_RS03905 0.21 -0.1 800,701 + ABID97_RS03905 0.21 +0.1 800,701 + ABID97_RS03905 0.21 +0.4 800,702 - ABID97_RS03905 0.22 -0.0 800,702 - ABID97_RS03905 0.22 +0.9 800,702 - ABID97_RS03905 0.22 +0.2 800,702 - ABID97_RS03905 0.22 -0.1 800,995 + ABID97_RS03905 0.58 +1.1 800,995 + ABID97_RS03905 0.58 +0.7 800,996 - ABID97_RS03905 0.58 +0.1 800,996 - ABID97_RS03905 0.58 +1.0 800,996 - ABID97_RS03905 0.58 +0.3 800,996 - ABID97_RS03905 0.58 -0.1 801,049 + ABID97_RS03905 0.65 +0.1 801,049 + ABID97_RS03905 0.65 +0.1 801,092 + ABID97_RS03905 0.70 +0.1 801,093 - ABID97_RS03905 0.70 +0.2 801,093 - ABID97_RS03905 0.70 -0.1 801,093 - ABID97_RS03905 0.70 +1.3 801,118 + ABID97_RS03905 0.73 +0.4 801,119 - ABID97_RS03905 0.73 -0.5 801,119 - ABID97_RS03905 0.73 -0.2 801,163 + ABID97_RS03905 0.79 +0.6 801,164 - ABID97_RS03905 0.79 +0.8 801,164 - ABID97_RS03905 0.79 -0.1 801,164 - ABID97_RS03905 0.79 +0.6 801,240 - ABID97_RS03905 0.88 -0.3 801,240 - ABID97_RS03905 0.88 +1.7 801,352 + +0.7 801,352 + -1.1 801,352 + -0.1 801,353 - +0.3 801,353 - -0.8 801,353 - -1.3 801,353 - +1.7 801,353 - -1.2 801,462 + ABID97_RS03910 0.17 +1.3 801,522 + ABID97_RS03910 0.26 +1.8 801,522 + ABID97_RS03910 0.26 +1.8 801,579 + ABID97_RS03910 0.34 +0.5 801,639 + ABID97_RS03910 0.43 +0.1 801,946 - ABID97_RS03910 0.88 +0.3 802,176 + ABID97_RS03915 0.20 -1.4 802,176 + ABID97_RS03915 0.20 -0.7 802,176 + ABID97_RS03915 0.20 -1.5 802,177 - ABID97_RS03915 0.20 -0.3 802,299 + ABID97_RS03915 0.38 -1.6 802,299 + ABID97_RS03915 0.38 -1.3 802,300 - ABID97_RS03915 0.38 -0.8 802,543 - ABID97_RS03915 0.73 -2.3 802,543 - ABID97_RS03915 0.73 -2.1 802,543 - ABID97_RS03915 0.73 +2.3 802,729 - -0.1 802,729 - -0.3 802,729 - -0.2 802,832 - +0.2
Or see this region's nucleotide sequence