Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03800 and ABID97_RS03805 are separated by 59 nucleotides ABID97_RS03805 and ABID97_RS03810 are separated by 108 nucleotides ABID97_RS03810 and ABID97_RS03815 are separated by 66 nucleotides
ABID97_RS03800: ABID97_RS03800 - O-antigen ligase family protein, at 778,083 to 779,339
_RS03800
ABID97_RS03805: ABID97_RS03805 - ATP-binding protein, at 779,399 to 780,595
_RS03805
ABID97_RS03810: ABID97_RS03810 - response regulator transcription factor, at 780,704 to 781,426
_RS03810
ABID97_RS03815: ABID97_RS03815 - NAD(P)/FAD-dependent oxidoreductase, at 781,493 to 783,136
_RS03815
Position (kb) 779
780
781 Strain fitness (log2 ratio) -1
0
1
2
3 at 778.525 kb on + strand, within ABID97_RS03800 at 778.525 kb on + strand, within ABID97_RS03800 at 778.526 kb on - strand, within ABID97_RS03800 at 778.627 kb on + strand, within ABID97_RS03800 at 778.627 kb on + strand, within ABID97_RS03800 at 778.628 kb on - strand, within ABID97_RS03800 at 778.628 kb on - strand, within ABID97_RS03800 at 778.628 kb on - strand, within ABID97_RS03800 at 778.630 kb on - strand, within ABID97_RS03800 at 779.158 kb on + strand, within ABID97_RS03800 at 779.263 kb on + strand at 779.264 kb on - strand at 779.353 kb on + strand at 779.562 kb on + strand, within ABID97_RS03805 at 779.563 kb on - strand, within ABID97_RS03805 at 780.567 kb on + strand at 780.568 kb on - strand at 780.661 kb on - strand at 780.661 kb on - strand at 780.730 kb on - strand at 780.927 kb on + strand, within ABID97_RS03810 at 780.928 kb on - strand, within ABID97_RS03810 at 781.353 kb on + strand, within ABID97_RS03810 at 781.353 kb on + strand, within ABID97_RS03810 at 781.354 kb on - strand at 781.354 kb on - strand at 781.354 kb on - strand at 781.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 778,525 + ABID97_RS03800 0.35 +0.1 778,525 + ABID97_RS03800 0.35 +0.5 778,526 - ABID97_RS03800 0.35 +2.9 778,627 + ABID97_RS03800 0.43 -0.5 778,627 + ABID97_RS03800 0.43 -1.2 778,628 - ABID97_RS03800 0.43 +0.2 778,628 - ABID97_RS03800 0.43 +0.3 778,628 - ABID97_RS03800 0.43 +1.9 778,630 - ABID97_RS03800 0.44 -0.3 779,158 + ABID97_RS03800 0.86 -1.1 779,263 + +0.9 779,264 - -0.1 779,353 + -0.2 779,562 + ABID97_RS03805 0.14 -1.4 779,563 - ABID97_RS03805 0.14 -1.3 780,567 + -0.2 780,568 - -0.3 780,661 - -0.4 780,661 - -0.9 780,730 - -0.9 780,927 + ABID97_RS03810 0.31 +0.3 780,928 - ABID97_RS03810 0.31 -0.2 781,353 + ABID97_RS03810 0.90 -0.1 781,353 + ABID97_RS03810 0.90 -0.0 781,354 - +0.0 781,354 - -0.4 781,354 - -0.9 781,474 + +0.3
Or see this region's nucleotide sequence