Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03775 and ABID97_RS03780 are separated by 135 nucleotides ABID97_RS03780 and ABID97_RS03785 are separated by 27 nucleotides ABID97_RS03785 and ABID97_RS03790 are separated by 140 nucleotides
ABID97_RS03775: ABID97_RS03775 - hypothetical protein, at 774,672 to 775,127
_RS03775
ABID97_RS03780: ABID97_RS03780 - glycerate kinase, at 775,263 to 775,691
_RS03780
ABID97_RS03785: ABID97_RS03785 - recombination-associated protein RdgC, at 775,719 to 776,730
_RS03785
ABID97_RS03790: ABID97_RS03790 - branched-chain amino acid transaminase, at 776,871 to 777,824
_RS03790
Position (kb) 775
776
777 Strain fitness (log2 ratio) -1
0
1 at 774.754 kb on + strand, within ABID97_RS03775 at 774.997 kb on + strand, within ABID97_RS03775 at 775.127 kb on + strand at 775.127 kb on + strand at 775.128 kb on - strand at 775.128 kb on - strand at 775.128 kb on - strand at 775.246 kb on + strand at 775.338 kb on + strand, within ABID97_RS03780 at 775.339 kb on - strand, within ABID97_RS03780 at 775.339 kb on - strand, within ABID97_RS03780 at 775.573 kb on - strand, within ABID97_RS03780 at 776.529 kb on - strand, within ABID97_RS03785 at 776.529 kb on - strand, within ABID97_RS03785 at 776.529 kb on - strand, within ABID97_RS03785 at 776.702 kb on + strand at 776.702 kb on + strand at 776.723 kb on - strand at 776.857 kb on + strand at 776.858 kb on - strand at 777.015 kb on + strand, within ABID97_RS03790 at 777.015 kb on + strand, within ABID97_RS03790 at 777.177 kb on + strand, within ABID97_RS03790 at 777.177 kb on + strand, within ABID97_RS03790 at 777.178 kb on - strand, within ABID97_RS03790 at 777.276 kb on + strand, within ABID97_RS03790 at 777.276 kb on + strand, within ABID97_RS03790 at 777.277 kb on - strand, within ABID97_RS03790 at 777.277 kb on - strand, within ABID97_RS03790 at 777.328 kb on - strand, within ABID97_RS03790 at 777.328 kb on - strand, within ABID97_RS03790 at 777.328 kb on - strand, within ABID97_RS03790 at 777.381 kb on + strand, within ABID97_RS03790 at 777.381 kb on + strand, within ABID97_RS03790 at 777.382 kb on - strand, within ABID97_RS03790 at 777.513 kb on + strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790 at 777.631 kb on - strand, within ABID97_RS03790
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 774,754 + ABID97_RS03775 0.18 -0.1 774,997 + ABID97_RS03775 0.71 +0.5 775,127 + -0.3 775,127 + +0.3 775,128 - -0.1 775,128 - -0.2 775,128 - -0.5 775,246 + -0.1 775,338 + ABID97_RS03780 0.17 +0.4 775,339 - ABID97_RS03780 0.18 +0.9 775,339 - ABID97_RS03780 0.18 +0.2 775,573 - ABID97_RS03780 0.72 +0.3 776,529 - ABID97_RS03785 0.80 -0.2 776,529 - ABID97_RS03785 0.80 -1.0 776,529 - ABID97_RS03785 0.80 +0.7 776,702 + +0.3 776,702 + -0.0 776,723 - -1.5 776,857 + -0.7 776,858 - +0.2 777,015 + ABID97_RS03790 0.15 -0.5 777,015 + ABID97_RS03790 0.15 -0.6 777,177 + ABID97_RS03790 0.32 +0.4 777,177 + ABID97_RS03790 0.32 -0.6 777,178 - ABID97_RS03790 0.32 -0.3 777,276 + ABID97_RS03790 0.42 -1.2 777,276 + ABID97_RS03790 0.42 +0.3 777,277 - ABID97_RS03790 0.43 +0.4 777,277 - ABID97_RS03790 0.43 +0.4 777,328 - ABID97_RS03790 0.48 -0.6 777,328 - ABID97_RS03790 0.48 -1.3 777,328 - ABID97_RS03790 0.48 +0.5 777,381 + ABID97_RS03790 0.53 +0.9 777,381 + ABID97_RS03790 0.53 -1.1 777,382 - ABID97_RS03790 0.54 -0.6 777,513 + ABID97_RS03790 0.67 -1.2 777,631 - ABID97_RS03790 0.80 +0.6 777,631 - ABID97_RS03790 0.80 +0.2 777,631 - ABID97_RS03790 0.80 -1.7 777,631 - ABID97_RS03790 0.80 -0.4
Or see this region's nucleotide sequence