Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03670 and ABID97_RS03675 are separated by 12 nucleotides ABID97_RS03675 and ABID97_RS03680 are separated by 75 nucleotides ABID97_RS03680 and ABID97_RS03685 are separated by 170 nucleotides
ABID97_RS03670: ABID97_RS03670 - glutathione peroxidase, at 755,567 to 756,055
_RS03670
ABID97_RS03675: ABID97_RS03675 - DMT family transporter, at 756,068 to 756,958
_RS03675
ABID97_RS03680: ABID97_RS03680 - lysophospholipid transporter LplT, at 757,034 to 758,338
_RS03680
ABID97_RS03685: ABID97_RS03685 - alanine racemase, at 758,509 to 759,609
_RS03685
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 756.042 kb on + strand at 756.043 kb on - strand at 756.043 kb on - strand at 756.043 kb on - strand at 756.065 kb on - strand at 756.277 kb on - strand, within ABID97_RS03675 at 756.681 kb on + strand, within ABID97_RS03675 at 756.682 kb on - strand, within ABID97_RS03675 at 756.846 kb on + strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 757.090 kb on - strand at 757.207 kb on - strand, within ABID97_RS03680 at 757.542 kb on + strand, within ABID97_RS03680 at 757.578 kb on + strand, within ABID97_RS03680 at 757.578 kb on + strand, within ABID97_RS03680 at 757.578 kb on + strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.792 kb on - strand, within ABID97_RS03680 at 758.009 kb on + strand, within ABID97_RS03680 at 758.010 kb on + strand, within ABID97_RS03680 at 758.010 kb on + strand, within ABID97_RS03680 at 758.010 kb on + strand, within ABID97_RS03680 at 758.011 kb on - strand, within ABID97_RS03680 at 758.025 kb on + strand, within ABID97_RS03680 at 758.187 kb on + strand, within ABID97_RS03680 at 758.322 kb on + strand at 758.323 kb on - strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.477 kb on + strand at 758.477 kb on + strand at 758.478 kb on - strand at 758.478 kb on - strand at 758.478 kb on - strand at 758.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 756,042 + +0.1 756,043 - +0.3 756,043 - -0.4 756,043 - -1.0 756,065 - +0.7 756,277 - ABID97_RS03675 0.23 -0.2 756,681 + ABID97_RS03675 0.69 +1.2 756,682 - ABID97_RS03675 0.69 +0.1 756,846 + ABID97_RS03675 0.87 -0.4 756,847 - ABID97_RS03675 0.87 +0.1 756,847 - ABID97_RS03675 0.87 -0.2 756,847 - ABID97_RS03675 0.87 -0.2 757,090 - -1.1 757,207 - ABID97_RS03680 0.13 -1.7 757,542 + ABID97_RS03680 0.39 -0.7 757,578 + ABID97_RS03680 0.42 +1.0 757,578 + ABID97_RS03680 0.42 -0.4 757,578 + ABID97_RS03680 0.42 -0.7 757,579 - ABID97_RS03680 0.42 -1.2 757,579 - ABID97_RS03680 0.42 -0.2 757,579 - ABID97_RS03680 0.42 -2.2 757,579 - ABID97_RS03680 0.42 -1.2 757,792 - ABID97_RS03680 0.58 -3.0 758,009 + ABID97_RS03680 0.75 -1.2 758,010 + ABID97_RS03680 0.75 -2.2 758,010 + ABID97_RS03680 0.75 -2.0 758,010 + ABID97_RS03680 0.75 -0.7 758,011 - ABID97_RS03680 0.75 -2.6 758,025 + ABID97_RS03680 0.76 -1.2 758,187 + ABID97_RS03680 0.88 +0.7 758,322 + -0.8 758,323 - +1.3 758,413 + +0.1 758,413 + -0.1 758,413 + -0.3 758,413 + +0.1 758,413 + -0.1 758,414 - -0.0 758,414 - +0.0 758,414 - +0.1 758,414 - -0.1 758,414 - -0.1 758,414 - -0.0 758,414 - -0.8 758,477 + -0.9 758,477 + -1.7 758,478 - -0.0 758,478 - +1.5 758,478 - +0.6 758,478 - +0.6
Or see this region's nucleotide sequence