Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03185 and ABID97_RS03190 are separated by 287 nucleotides ABID97_RS03190 and ABID97_RS03195 are separated by 68 nucleotides ABID97_RS03195 and ABID97_RS03200 are separated by 62 nucleotides
ABID97_RS03185: ABID97_RS03185 - adenylate/guanylate cyclase domain-containing protein, at 645,323 to 647,140
_RS03185
ABID97_RS03190: ABID97_RS03190 - 2OG-Fe(II) oxygenase, at 647,428 to 648,144
_RS03190
ABID97_RS03195: ABID97_RS03195 - phage holin family protein, at 648,213 to 648,617
_RS03195
ABID97_RS03200: ABID97_RS03200 - LysR substrate-binding domain-containing protein, at 648,680 to 649,600
_RS03200
Position (kb) 647
648
649 Strain fitness (log2 ratio) -1
0
1 at 646.581 kb on + strand, within ABID97_RS03185 at 646.582 kb on - strand, within ABID97_RS03185 at 646.617 kb on + strand, within ABID97_RS03185 at 646.617 kb on + strand, within ABID97_RS03185 at 646.618 kb on - strand, within ABID97_RS03185 at 646.618 kb on - strand, within ABID97_RS03185 at 646.618 kb on - strand, within ABID97_RS03185 at 646.618 kb on - strand, within ABID97_RS03185 at 646.662 kb on + strand, within ABID97_RS03185 at 646.662 kb on + strand, within ABID97_RS03185 at 646.662 kb on + strand, within ABID97_RS03185 at 646.662 kb on + strand, within ABID97_RS03185 at 646.663 kb on - strand, within ABID97_RS03185 at 646.686 kb on + strand, within ABID97_RS03185 at 646.722 kb on + strand, within ABID97_RS03185 at 646.869 kb on + strand, within ABID97_RS03185 at 646.870 kb on - strand, within ABID97_RS03185 at 646.870 kb on - strand, within ABID97_RS03185 at 646.870 kb on - strand, within ABID97_RS03185 at 646.870 kb on - strand, within ABID97_RS03185 at 647.269 kb on + strand at 647.269 kb on + strand at 647.270 kb on - strand at 647.461 kb on - strand at 647.513 kb on + strand, within ABID97_RS03190 at 647.674 kb on + strand, within ABID97_RS03190 at 647.674 kb on + strand, within ABID97_RS03190 at 647.674 kb on + strand, within ABID97_RS03190 at 647.708 kb on + strand, within ABID97_RS03190 at 647.708 kb on + strand, within ABID97_RS03190 at 647.708 kb on + strand, within ABID97_RS03190 at 647.709 kb on - strand, within ABID97_RS03190 at 647.732 kb on + strand, within ABID97_RS03190 at 647.804 kb on + strand, within ABID97_RS03190 at 648.008 kb on + strand, within ABID97_RS03190 at 648.009 kb on - strand, within ABID97_RS03190 at 648.206 kb on + strand at 648.206 kb on + strand at 648.667 kb on + strand at 648.667 kb on + strand at 648.668 kb on - strand at 648.772 kb on - strand, within ABID97_RS03200 at 648.772 kb on - strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.774 kb on + strand, within ABID97_RS03200 at 648.775 kb on - strand, within ABID97_RS03200 at 648.775 kb on - strand, within ABID97_RS03200 at 648.775 kb on - strand, within ABID97_RS03200 at 648.866 kb on + strand, within ABID97_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 646,581 + ABID97_RS03185 0.69 -0.1 646,582 - ABID97_RS03185 0.69 -0.1 646,617 + ABID97_RS03185 0.71 +0.1 646,617 + ABID97_RS03185 0.71 -0.1 646,618 - ABID97_RS03185 0.71 -0.1 646,618 - ABID97_RS03185 0.71 -0.1 646,618 - ABID97_RS03185 0.71 +1.7 646,618 - ABID97_RS03185 0.71 +0.5 646,662 + ABID97_RS03185 0.74 -0.5 646,662 + ABID97_RS03185 0.74 -0.2 646,662 + ABID97_RS03185 0.74 -0.0 646,662 + ABID97_RS03185 0.74 -0.6 646,663 - ABID97_RS03185 0.74 -0.1 646,686 + ABID97_RS03185 0.75 +0.4 646,722 + ABID97_RS03185 0.77 +0.2 646,869 + ABID97_RS03185 0.85 -0.2 646,870 - ABID97_RS03185 0.85 -0.7 646,870 - ABID97_RS03185 0.85 +0.2 646,870 - ABID97_RS03185 0.85 +0.4 646,870 - ABID97_RS03185 0.85 +0.2 647,269 + -1.1 647,269 + +0.0 647,270 - +0.3 647,461 - -0.4 647,513 + ABID97_RS03190 0.12 +0.7 647,674 + ABID97_RS03190 0.34 -0.1 647,674 + ABID97_RS03190 0.34 -0.3 647,674 + ABID97_RS03190 0.34 +0.1 647,708 + ABID97_RS03190 0.39 +0.4 647,708 + ABID97_RS03190 0.39 -0.1 647,708 + ABID97_RS03190 0.39 +0.1 647,709 - ABID97_RS03190 0.39 -0.4 647,732 + ABID97_RS03190 0.42 -1.5 647,804 + ABID97_RS03190 0.52 -1.2 648,008 + ABID97_RS03190 0.81 -0.4 648,009 - ABID97_RS03190 0.81 +0.3 648,206 + -1.5 648,206 + +1.2 648,667 + +0.7 648,667 + +0.8 648,668 - +1.2 648,772 - ABID97_RS03200 0.10 +0.3 648,772 - ABID97_RS03200 0.10 -0.4 648,774 + ABID97_RS03200 0.10 +0.3 648,774 + ABID97_RS03200 0.10 +0.1 648,774 + ABID97_RS03200 0.10 +0.2 648,774 + ABID97_RS03200 0.10 -0.1 648,775 - ABID97_RS03200 0.10 +1.4 648,775 - ABID97_RS03200 0.10 -0.5 648,775 - ABID97_RS03200 0.10 +0.1 648,866 + ABID97_RS03200 0.20 -1.1
Or see this region's nucleotide sequence