Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02580

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02570 and ABID97_RS02575 are separated by 90 nucleotidesABID97_RS02575 and ABID97_RS02580 are separated by 18 nucleotidesABID97_RS02580 and ABID97_RS02585 are separated by 136 nucleotides ABID97_RS02570: ABID97_RS02570 - M20 family metallopeptidase, at 526,146 to 527,657 _RS02570 ABID97_RS02575: ABID97_RS02575 - DUF72 domain-containing protein, at 527,748 to 528,545 _RS02575 ABID97_RS02580: ABID97_RS02580 - polymer-forming cytoskeletal protein, at 528,564 to 529,079 _RS02580 ABID97_RS02585: ABID97_RS02585 - ion transporter, at 529,216 to 530,139 _RS02585 Position (kb) 528 529 530Strain fitness (log2 ratio) -1 0 1 2at 527.716 kb on - strandat 527.716 kb on - strandat 527.811 kb on + strandat 527.811 kb on + strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.835 kb on + strand, within ABID97_RS02575at 527.835 kb on + strand, within ABID97_RS02575at 527.872 kb on - strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.330 kb on + strand, within ABID97_RS02575at 528.373 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.650 kb on - strand, within ABID97_RS02580at 529.073 kb on + strandat 529.073 kb on + strandat 529.073 kb on + strandat 529.073 kb on + strandat 529.074 kb on - strandat 529.110 kb on - strandat 529.110 kb on - strandat 529.110 kb on - strandat 529.163 kb on - strandat 529.163 kb on - strandat 529.163 kb on - strandat 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.552 kb on + strand, within ABID97_RS02585at 529.553 kb on - strand, within ABID97_RS02585at 529.618 kb on + strand, within ABID97_RS02585at 529.619 kb on - strand, within ABID97_RS02585at 529.619 kb on - strand, within ABID97_RS02585at 529.682 kb on - strand, within ABID97_RS02585at 529.694 kb on - strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.792 kb on + strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.793 kb on - strand, within ABID97_RS02585at 529.843 kb on + strand, within ABID97_RS02585at 529.843 kb on + strand, within ABID97_RS02585at 529.843 kb on + strand, within ABID97_RS02585at 529.844 kb on - strand, within ABID97_RS02585at 529.844 kb on - strand, within ABID97_RS02585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
527,716 - -0.1
527,716 - +2.0
527,811 + -0.8
527,811 + +0.3
527,812 - -0.5
527,812 - +0.0
527,812 - -0.1
527,812 - -1.2
527,835 + ABID97_RS02575 0.11 +1.8
527,835 + ABID97_RS02575 0.11 +0.5
527,872 - ABID97_RS02575 0.16 +0.1
527,913 + ABID97_RS02575 0.21 -0.4
527,913 + ABID97_RS02575 0.21 -0.3
527,913 + ABID97_RS02575 0.21 -0.0
527,913 + ABID97_RS02575 0.21 -0.5
527,913 + ABID97_RS02575 0.21 +0.6
527,913 + ABID97_RS02575 0.21 +0.2
527,913 + ABID97_RS02575 0.21 +2.2
527,913 + ABID97_RS02575 0.21 -0.1
527,913 + ABID97_RS02575 0.21 +0.0
527,913 + ABID97_RS02575 0.21 +0.1
527,913 + ABID97_RS02575 0.21 -0.1
527,913 + ABID97_RS02575 0.21 -0.3
527,914 - ABID97_RS02575 0.21 -0.3
527,914 - ABID97_RS02575 0.21 +0.3
527,914 - ABID97_RS02575 0.21 -0.2
527,914 - ABID97_RS02575 0.21 +1.8
527,914 - ABID97_RS02575 0.21 +0.2
527,914 - ABID97_RS02575 0.21 +0.2
527,914 - ABID97_RS02575 0.21 +0.1
527,916 + ABID97_RS02575 0.21 -1.1
527,916 + ABID97_RS02575 0.21 -1.4
527,916 + ABID97_RS02575 0.21 -0.4
527,916 + ABID97_RS02575 0.21 -0.7
527,916 + ABID97_RS02575 0.21 -0.0
527,916 + ABID97_RS02575 0.21 -0.5
527,916 + ABID97_RS02575 0.21 +0.1
527,917 - ABID97_RS02575 0.21 +1.4
527,917 - ABID97_RS02575 0.21 -0.0
527,917 - ABID97_RS02575 0.21 -0.1
527,917 - ABID97_RS02575 0.21 +0.1
527,917 - ABID97_RS02575 0.21 +0.1
527,917 - ABID97_RS02575 0.21 +0.6
527,917 - ABID97_RS02575 0.21 +0.1
528,258 + ABID97_RS02575 0.64 +1.0
528,258 + ABID97_RS02575 0.64 +0.4
528,258 + ABID97_RS02575 0.64 +0.5
528,259 - ABID97_RS02575 0.64 -0.1
528,259 - ABID97_RS02575 0.64 +0.0
528,330 + ABID97_RS02575 0.73 -0.1
528,373 - ABID97_RS02575 0.78 +0.2
528,454 - ABID97_RS02575 0.88 +0.7
528,454 - ABID97_RS02575 0.88 -0.8
528,454 - ABID97_RS02575 0.88 +0.5
528,650 - ABID97_RS02580 0.17 +0.4
529,073 + -0.3
529,073 + +0.1
529,073 + -0.3
529,073 + -0.3
529,074 - +2.1
529,110 - +0.5
529,110 - -0.2
529,110 - +1.4
529,163 - -0.0
529,163 - +2.5
529,163 - -0.2
529,498 + ABID97_RS02585 0.31 +1.6
529,498 + ABID97_RS02585 0.31 +0.4
529,498 + ABID97_RS02585 0.31 -0.1
529,498 + ABID97_RS02585 0.31 -0.2
529,498 + ABID97_RS02585 0.31 -0.0
529,498 + ABID97_RS02585 0.31 -0.8
529,498 + ABID97_RS02585 0.31 -0.0
529,498 + ABID97_RS02585 0.31 -0.8
529,499 - ABID97_RS02585 0.31 +0.0
529,499 - ABID97_RS02585 0.31 -0.1
529,499 - ABID97_RS02585 0.31 -0.1
529,499 - ABID97_RS02585 0.31 -0.1
529,499 - ABID97_RS02585 0.31 +1.5
529,552 + ABID97_RS02585 0.36 -0.4
529,552 + ABID97_RS02585 0.36 +0.2
529,552 + ABID97_RS02585 0.36 +0.8
529,552 + ABID97_RS02585 0.36 -0.2
529,553 - ABID97_RS02585 0.36 -0.2
529,618 + ABID97_RS02585 0.44 -0.0
529,619 - ABID97_RS02585 0.44 +0.8
529,619 - ABID97_RS02585 0.44 +0.3
529,682 - ABID97_RS02585 0.50 -0.0
529,694 - ABID97_RS02585 0.52 -0.8
529,792 + ABID97_RS02585 0.62 +0.1
529,792 + ABID97_RS02585 0.62 -0.1
529,792 + ABID97_RS02585 0.62 -0.0
529,792 + ABID97_RS02585 0.62 -0.5
529,792 + ABID97_RS02585 0.62 +0.3
529,792 + ABID97_RS02585 0.62 +1.1
529,792 + ABID97_RS02585 0.62 +0.8
529,793 - ABID97_RS02585 0.62 -0.1
529,793 - ABID97_RS02585 0.62 -0.0
529,793 - ABID97_RS02585 0.62 -0.4
529,793 - ABID97_RS02585 0.62 +0.3
529,793 - ABID97_RS02585 0.62 +1.4
529,793 - ABID97_RS02585 0.62 +0.3
529,843 + ABID97_RS02585 0.68 -0.2
529,843 + ABID97_RS02585 0.68 +0.3
529,843 + ABID97_RS02585 0.68 -0.4
529,844 - ABID97_RS02585 0.68 +0.1
529,844 - ABID97_RS02585 0.68 +0.0

Or see this region's nucleotide sequence