Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02260 and ABID97_RS02265 are separated by 51 nucleotides ABID97_RS02265 and ABID97_RS02270 overlap by 32 nucleotides ABID97_RS02270 and ABID97_RS02275 are separated by 48 nucleotides ABID97_RS02275 and ABID97_RS02280 are separated by 145 nucleotides ABID97_RS02280 and ABID97_RS02285 are separated by 67 nucleotides
ABID97_RS02260: ABID97_RS02260 - inner membrane protein YiaA, at 457,585 to 458,022
_RS02260
ABID97_RS02265: ABID97_RS02265 - SRPBCC family protein, at 458,074 to 458,514
_RS02265
ABID97_RS02270: ABID97_RS02270 - recombination regulator RecX, at 458,483 to 458,956
_RS02270
ABID97_RS02275: ABID97_RS02275 - recombinase RecA, at 459,005 to 460,120
_RS02275
ABID97_RS02280: ABID97_RS02280 - helix-turn-helix domain-containing protein, at 460,266 to 460,751
_RS02280
ABID97_RS02285: ABID97_RS02285 - response regulator transcription factor, at 460,819 to 461,493
_RS02285
Position (kb)
459
460
461 Strain fitness (log2 ratio)
-1
0
1 at 458.005 kb on - strand at 458.231 kb on + strand, within ABID97_RS02265 at 458.232 kb on - strand, within ABID97_RS02265 at 458.232 kb on - strand, within ABID97_RS02265 at 458.531 kb on + strand, within ABID97_RS02270 at 458.531 kb on + strand, within ABID97_RS02270 at 458.531 kb on + strand, within ABID97_RS02270 at 458.532 kb on - strand, within ABID97_RS02270 at 458.532 kb on - strand, within ABID97_RS02270 at 459.006 kb on + strand at 459.006 kb on + strand at 459.007 kb on - strand at 459.207 kb on + strand, within ABID97_RS02275 at 459.207 kb on + strand, within ABID97_RS02275 at 459.207 kb on + strand, within ABID97_RS02275 at 459.207 kb on - strand, within ABID97_RS02275 at 459.208 kb on - strand, within ABID97_RS02275 at 459.208 kb on - strand, within ABID97_RS02275 at 459.213 kb on + strand, within ABID97_RS02275 at 459.432 kb on + strand, within ABID97_RS02275 at 459.433 kb on - strand, within ABID97_RS02275 at 459.433 kb on - strand, within ABID97_RS02275 at 459.433 kb on - strand, within ABID97_RS02275 at 459.433 kb on - strand, within ABID97_RS02275 at 459.777 kb on + strand, within ABID97_RS02275 at 459.777 kb on + strand, within ABID97_RS02275 at 459.891 kb on + strand, within ABID97_RS02275 at 459.892 kb on - strand, within ABID97_RS02275 at 459.892 kb on - strand, within ABID97_RS02275 at 460.207 kb on - strand at 460.207 kb on - strand at 460.718 kb on - strand at 460.737 kb on + strand at 460.737 kb on + strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.739 kb on + strand at 460.740 kb on - strand at 460.740 kb on - strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.769 kb on + strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 460.770 kb on - strand at 461.006 kb on + strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.007 kb on - strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.113 kb on + strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285 at 461.114 kb on - strand, within ABID97_RS02285
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 458,005 - -0.2 458,231 + ABID97_RS02265 0.36 +0.0 458,232 - ABID97_RS02265 0.36 -0.1 458,232 - ABID97_RS02265 0.36 -0.3 458,531 + ABID97_RS02270 0.10 +0.5 458,531 + ABID97_RS02270 0.10 -0.1 458,531 + ABID97_RS02270 0.10 -0.2 458,532 - ABID97_RS02270 0.10 +0.3 458,532 - ABID97_RS02270 0.10 -1.1 459,006 + -0.9 459,006 + +1.1 459,007 - +0.9 459,207 + ABID97_RS02275 0.18 -1.2 459,207 + ABID97_RS02275 0.18 -0.6 459,207 + ABID97_RS02275 0.18 -1.3 459,207 - ABID97_RS02275 0.18 +0.7 459,208 - ABID97_RS02275 0.18 -1.5 459,208 - ABID97_RS02275 0.18 +0.4 459,213 + ABID97_RS02275 0.19 -0.9 459,432 + ABID97_RS02275 0.38 -0.6 459,433 - ABID97_RS02275 0.38 -1.6 459,433 - ABID97_RS02275 0.38 -0.7 459,433 - ABID97_RS02275 0.38 -1.2 459,433 - ABID97_RS02275 0.38 -0.9 459,777 + ABID97_RS02275 0.69 -1.1 459,777 + ABID97_RS02275 0.69 +1.0 459,891 + ABID97_RS02275 0.79 -0.5 459,892 - ABID97_RS02275 0.79 -1.3 459,892 - ABID97_RS02275 0.79 -0.6 460,207 - +1.3 460,207 - -0.6 460,718 - -0.4 460,737 + +0.4 460,737 + -0.3 460,738 - +0.5 460,738 - +0.2 460,738 - -1.1 460,738 - +0.3 460,738 - +0.2 460,738 - -0.5 460,738 - -1.2 460,738 - -0.2 460,738 - +0.0 460,739 + -0.7 460,739 + -0.0 460,739 + +0.8 460,739 + -0.1 460,739 + -0.5 460,739 + -0.1 460,740 - -0.5 460,740 - +0.0 460,769 + +0.1 460,769 + -0.2 460,769 + +0.3 460,769 + -0.2 460,769 + -0.1 460,769 + +0.1 460,769 + -0.1 460,769 + -0.1 460,769 + -1.2 460,769 + -0.1 460,769 + +0.3 460,769 + -0.3 460,769 + -0.2 460,769 + -1.3 460,769 + +0.3 460,769 + -0.4 460,770 - -0.1 460,770 - -0.1 460,770 - -0.6 460,770 - -0.2 460,770 - -0.2 460,770 - +0.2 460,770 - -0.0 460,770 - +0.6 460,770 - -0.0 460,770 - -1.1 460,770 - -0.2 460,770 - +0.4 460,770 - +1.0 460,770 - -0.4 460,770 - +0.0 460,770 - -0.5 460,770 - -0.2 460,770 - +0.3 460,770 - +0.1 461,006 + ABID97_RS02285 0.28 -0.0 461,007 - ABID97_RS02285 0.28 +0.0 461,007 - ABID97_RS02285 0.28 -0.1 461,007 - ABID97_RS02285 0.28 +0.1 461,007 - ABID97_RS02285 0.28 +0.1 461,007 - ABID97_RS02285 0.28 -0.2 461,113 + ABID97_RS02285 0.44 -0.0 461,113 + ABID97_RS02285 0.44 -0.2 461,113 + ABID97_RS02285 0.44 -0.4 461,113 + ABID97_RS02285 0.44 -0.5 461,113 + ABID97_RS02285 0.44 -0.6 461,113 + ABID97_RS02285 0.44 +0.2 461,114 - ABID97_RS02285 0.44 -0.4 461,114 - ABID97_RS02285 0.44 -0.6 461,114 - ABID97_RS02285 0.44 -0.2 461,114 - ABID97_RS02285 0.44 +0.2 461,114 - ABID97_RS02285 0.44 -0.6 461,114 - ABID97_RS02285 0.44 -0.5
Or see this region's nucleotide sequence