Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02275

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02260 and ABID97_RS02265 are separated by 51 nucleotidesABID97_RS02265 and ABID97_RS02270 overlap by 32 nucleotidesABID97_RS02270 and ABID97_RS02275 are separated by 48 nucleotidesABID97_RS02275 and ABID97_RS02280 are separated by 145 nucleotidesABID97_RS02280 and ABID97_RS02285 are separated by 67 nucleotides ABID97_RS02260: ABID97_RS02260 - inner membrane protein YiaA, at 457,585 to 458,022 _RS02260 ABID97_RS02265: ABID97_RS02265 - SRPBCC family protein, at 458,074 to 458,514 _RS02265 ABID97_RS02270: ABID97_RS02270 - recombination regulator RecX, at 458,483 to 458,956 _RS02270 ABID97_RS02275: ABID97_RS02275 - recombinase RecA, at 459,005 to 460,120 _RS02275 ABID97_RS02280: ABID97_RS02280 - helix-turn-helix domain-containing protein, at 460,266 to 460,751 _RS02280 ABID97_RS02285: ABID97_RS02285 - response regulator transcription factor, at 460,819 to 461,493 _RS02285 Position (kb) 459 460 461Strain fitness (log2 ratio) -1 0 1at 458.005 kb on - strandat 458.231 kb on + strand, within ABID97_RS02265at 458.232 kb on - strand, within ABID97_RS02265at 458.232 kb on - strand, within ABID97_RS02265at 458.531 kb on + strand, within ABID97_RS02270at 458.531 kb on + strand, within ABID97_RS02270at 458.531 kb on + strand, within ABID97_RS02270at 458.532 kb on - strand, within ABID97_RS02270at 458.532 kb on - strand, within ABID97_RS02270at 459.006 kb on + strandat 459.006 kb on + strandat 459.007 kb on - strandat 459.207 kb on + strand, within ABID97_RS02275at 459.207 kb on + strand, within ABID97_RS02275at 459.207 kb on + strand, within ABID97_RS02275at 459.207 kb on - strand, within ABID97_RS02275at 459.208 kb on - strand, within ABID97_RS02275at 459.208 kb on - strand, within ABID97_RS02275at 459.213 kb on + strand, within ABID97_RS02275at 459.432 kb on + strand, within ABID97_RS02275at 459.433 kb on - strand, within ABID97_RS02275at 459.433 kb on - strand, within ABID97_RS02275at 459.433 kb on - strand, within ABID97_RS02275at 459.433 kb on - strand, within ABID97_RS02275at 459.777 kb on + strand, within ABID97_RS02275at 459.777 kb on + strand, within ABID97_RS02275at 459.891 kb on + strand, within ABID97_RS02275at 459.892 kb on - strand, within ABID97_RS02275at 459.892 kb on - strand, within ABID97_RS02275at 460.207 kb on - strandat 460.207 kb on - strandat 460.718 kb on - strandat 460.737 kb on + strandat 460.737 kb on + strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.738 kb on - strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.739 kb on + strandat 460.740 kb on - strandat 460.740 kb on - strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.769 kb on + strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 460.770 kb on - strandat 461.006 kb on + strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.007 kb on - strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.113 kb on + strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285at 461.114 kb on - strand, within ABID97_RS02285

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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458,005 - -0.2
458,231 + ABID97_RS02265 0.36 +0.0
458,232 - ABID97_RS02265 0.36 -0.1
458,232 - ABID97_RS02265 0.36 -0.3
458,531 + ABID97_RS02270 0.10 +0.5
458,531 + ABID97_RS02270 0.10 -0.1
458,531 + ABID97_RS02270 0.10 -0.2
458,532 - ABID97_RS02270 0.10 +0.3
458,532 - ABID97_RS02270 0.10 -1.1
459,006 + -0.9
459,006 + +1.1
459,007 - +0.9
459,207 + ABID97_RS02275 0.18 -1.2
459,207 + ABID97_RS02275 0.18 -0.6
459,207 + ABID97_RS02275 0.18 -1.3
459,207 - ABID97_RS02275 0.18 +0.7
459,208 - ABID97_RS02275 0.18 -1.5
459,208 - ABID97_RS02275 0.18 +0.4
459,213 + ABID97_RS02275 0.19 -0.9
459,432 + ABID97_RS02275 0.38 -0.6
459,433 - ABID97_RS02275 0.38 -1.6
459,433 - ABID97_RS02275 0.38 -0.7
459,433 - ABID97_RS02275 0.38 -1.2
459,433 - ABID97_RS02275 0.38 -0.9
459,777 + ABID97_RS02275 0.69 -1.1
459,777 + ABID97_RS02275 0.69 +1.0
459,891 + ABID97_RS02275 0.79 -0.5
459,892 - ABID97_RS02275 0.79 -1.3
459,892 - ABID97_RS02275 0.79 -0.6
460,207 - +1.3
460,207 - -0.6
460,718 - -0.4
460,737 + +0.4
460,737 + -0.3
460,738 - +0.5
460,738 - +0.2
460,738 - -1.1
460,738 - +0.3
460,738 - +0.2
460,738 - -0.5
460,738 - -1.2
460,738 - -0.2
460,738 - +0.0
460,739 + -0.7
460,739 + -0.0
460,739 + +0.8
460,739 + -0.1
460,739 + -0.5
460,739 + -0.1
460,740 - -0.5
460,740 - +0.0
460,769 + +0.1
460,769 + -0.2
460,769 + +0.3
460,769 + -0.2
460,769 + -0.1
460,769 + +0.1
460,769 + -0.1
460,769 + -0.1
460,769 + -1.2
460,769 + -0.1
460,769 + +0.3
460,769 + -0.3
460,769 + -0.2
460,769 + -1.3
460,769 + +0.3
460,769 + -0.4
460,770 - -0.1
460,770 - -0.1
460,770 - -0.6
460,770 - -0.2
460,770 - -0.2
460,770 - +0.2
460,770 - -0.0
460,770 - +0.6
460,770 - -0.0
460,770 - -1.1
460,770 - -0.2
460,770 - +0.4
460,770 - +1.0
460,770 - -0.4
460,770 - +0.0
460,770 - -0.5
460,770 - -0.2
460,770 - +0.3
460,770 - +0.1
461,006 + ABID97_RS02285 0.28 -0.0
461,007 - ABID97_RS02285 0.28 +0.0
461,007 - ABID97_RS02285 0.28 -0.1
461,007 - ABID97_RS02285 0.28 +0.1
461,007 - ABID97_RS02285 0.28 +0.1
461,007 - ABID97_RS02285 0.28 -0.2
461,113 + ABID97_RS02285 0.44 -0.0
461,113 + ABID97_RS02285 0.44 -0.2
461,113 + ABID97_RS02285 0.44 -0.4
461,113 + ABID97_RS02285 0.44 -0.5
461,113 + ABID97_RS02285 0.44 -0.6
461,113 + ABID97_RS02285 0.44 +0.2
461,114 - ABID97_RS02285 0.44 -0.4
461,114 - ABID97_RS02285 0.44 -0.6
461,114 - ABID97_RS02285 0.44 -0.2
461,114 - ABID97_RS02285 0.44 +0.2
461,114 - ABID97_RS02285 0.44 -0.6
461,114 - ABID97_RS02285 0.44 -0.5

Or see this region's nucleotide sequence