Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02210

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02205 and ABID97_RS02210 are separated by 90 nucleotidesABID97_RS02210 and ABID97_RS02215 are separated by 217 nucleotides ABID97_RS02205: ABID97_RS02205 - Wzy polymerase domain-containing protein, at 445,476 to 447,167 _RS02205 ABID97_RS02210: ABID97_RS02210 - pilin, at 447,258 to 447,749 _RS02210 ABID97_RS02215: ABID97_RS02215 - 3',5'-cyclic-nucleotide phosphodiesterase, at 447,967 to 448,770 _RS02215 Position (kb) 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 446.394 kb on + strand, within ABID97_RS02205at 446.394 kb on + strand, within ABID97_RS02205at 446.394 kb on + strand, within ABID97_RS02205at 446.394 kb on + strand, within ABID97_RS02205at 446.394 kb on + strand, within ABID97_RS02205at 446.394 kb on + strand, within ABID97_RS02205at 446.394 kb on + strand, within ABID97_RS02205at 446.395 kb on - strand, within ABID97_RS02205at 446.405 kb on + strand, within ABID97_RS02205at 446.425 kb on - strand, within ABID97_RS02205at 446.425 kb on - strand, within ABID97_RS02205at 446.434 kb on + strand, within ABID97_RS02205at 446.434 kb on + strand, within ABID97_RS02205at 446.434 kb on + strand, within ABID97_RS02205at 446.434 kb on + strand, within ABID97_RS02205at 446.434 kb on + strand, within ABID97_RS02205at 446.434 kb on + strand, within ABID97_RS02205at 446.435 kb on - strand, within ABID97_RS02205at 446.435 kb on - strand, within ABID97_RS02205at 446.435 kb on - strand, within ABID97_RS02205at 446.435 kb on - strand, within ABID97_RS02205at 446.435 kb on - strand, within ABID97_RS02205at 446.435 kb on - strand, within ABID97_RS02205at 446.444 kb on + strand, within ABID97_RS02205at 446.445 kb on - strand, within ABID97_RS02205at 446.445 kb on - strand, within ABID97_RS02205at 446.574 kb on + strand, within ABID97_RS02205at 446.575 kb on - strand, within ABID97_RS02205at 446.575 kb on - strand, within ABID97_RS02205at 446.631 kb on + strand, within ABID97_RS02205at 446.632 kb on - strand, within ABID97_RS02205at 446.640 kb on + strand, within ABID97_RS02205at 446.641 kb on - strand, within ABID97_RS02205at 446.641 kb on - strand, within ABID97_RS02205at 446.652 kb on + strand, within ABID97_RS02205at 446.653 kb on - strand, within ABID97_RS02205at 446.685 kb on + strand, within ABID97_RS02205at 446.685 kb on + strand, within ABID97_RS02205at 446.728 kb on + strand, within ABID97_RS02205at 446.898 kb on + strand, within ABID97_RS02205at 446.901 kb on + strand, within ABID97_RS02205at 446.901 kb on + strand, within ABID97_RS02205at 446.901 kb on + strand, within ABID97_RS02205at 446.901 kb on + strand, within ABID97_RS02205at 446.902 kb on - strand, within ABID97_RS02205at 446.906 kb on - strand, within ABID97_RS02205at 446.940 kb on + strand, within ABID97_RS02205at 446.940 kb on + strand, within ABID97_RS02205at 446.941 kb on - strand, within ABID97_RS02205at 446.941 kb on - strand, within ABID97_RS02205at 446.983 kb on - strand, within ABID97_RS02205at 447.048 kb on + strandat 447.048 kb on + strandat 447.118 kb on + strandat 447.118 kb on + strandat 447.119 kb on - strandat 447.119 kb on - strandat 447.119 kb on - strandat 447.123 kb on + strandat 447.124 kb on - strandat 447.237 kb on + strandat 447.238 kb on - strandat 447.250 kb on - strandat 447.250 kb on - strandat 447.250 kb on - strandat 447.250 kb on - strandat 447.260 kb on - strandat 447.263 kb on + strandat 447.286 kb on + strandat 447.287 kb on - strandat 447.287 kb on - strandat 447.287 kb on - strandat 447.287 kb on - strandat 447.385 kb on + strand, within ABID97_RS02210at 447.385 kb on + strand, within ABID97_RS02210at 447.385 kb on + strand, within ABID97_RS02210at 447.393 kb on - strand, within ABID97_RS02210at 447.437 kb on + strand, within ABID97_RS02210at 447.437 kb on + strand, within ABID97_RS02210at 447.437 kb on + strand, within ABID97_RS02210at 447.438 kb on - strand, within ABID97_RS02210at 447.438 kb on - strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.490 kb on + strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.491 kb on - strand, within ABID97_RS02210at 447.509 kb on + strand, within ABID97_RS02210at 447.510 kb on - strand, within ABID97_RS02210at 447.646 kb on + strand, within ABID97_RS02210at 447.646 kb on + strand, within ABID97_RS02210at 447.646 kb on + strand, within ABID97_RS02210at 447.647 kb on - strand, within ABID97_RS02210at 447.647 kb on - strand, within ABID97_RS02210at 447.683 kb on + strand, within ABID97_RS02210at 447.683 kb on + strand, within ABID97_RS02210at 447.684 kb on - strand, within ABID97_RS02210at 447.684 kb on - strand, within ABID97_RS02210at 447.788 kb on + strandat 447.789 kb on - strandat 447.789 kb on - strandat 447.818 kb on - strandat 447.818 kb on - strandat 447.851 kb on + strandat 447.852 kb on - strandat 447.852 kb on - strandat 447.862 kb on - strandat 448.039 kb on + strandat 448.089 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on + strand, within ABID97_RS02215at 448.100 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.101 kb on - strand, within ABID97_RS02215at 448.109 kb on + strand, within ABID97_RS02215at 448.109 kb on + strand, within ABID97_RS02215at 448.110 kb on - strand, within ABID97_RS02215

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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446,394 + ABID97_RS02205 0.54 -0.1
446,394 + ABID97_RS02205 0.54 -1.6
446,394 + ABID97_RS02205 0.54 -0.6
446,394 + ABID97_RS02205 0.54 -1.3
446,394 + ABID97_RS02205 0.54 -1.2
446,394 + ABID97_RS02205 0.54 -1.7
446,394 + ABID97_RS02205 0.54 +0.4
446,395 - ABID97_RS02205 0.54 -0.9
446,405 + ABID97_RS02205 0.55 +0.5
446,425 - ABID97_RS02205 0.56 -0.1
446,425 - ABID97_RS02205 0.56 -0.5
446,434 + ABID97_RS02205 0.57 -1.2
446,434 + ABID97_RS02205 0.57 -1.5
446,434 + ABID97_RS02205 0.57 -1.1
446,434 + ABID97_RS02205 0.57 -0.7
446,434 + ABID97_RS02205 0.57 -0.9
446,434 + ABID97_RS02205 0.57 +1.5
446,435 - ABID97_RS02205 0.57 -0.8
446,435 - ABID97_RS02205 0.57 -0.8
446,435 - ABID97_RS02205 0.57 -1.0
446,435 - ABID97_RS02205 0.57 +0.4
446,435 - ABID97_RS02205 0.57 -0.5
446,435 - ABID97_RS02205 0.57 -0.4
446,444 + ABID97_RS02205 0.57 -1.9
446,445 - ABID97_RS02205 0.57 -1.2
446,445 - ABID97_RS02205 0.57 -1.1
446,574 + ABID97_RS02205 0.65 -0.8
446,575 - ABID97_RS02205 0.65 -0.9
446,575 - ABID97_RS02205 0.65 +0.1
446,631 + ABID97_RS02205 0.68 -1.5
446,632 - ABID97_RS02205 0.68 -0.9
446,640 + ABID97_RS02205 0.69 -2.1
446,641 - ABID97_RS02205 0.69 -0.3
446,641 - ABID97_RS02205 0.69 -0.1
446,652 + ABID97_RS02205 0.70 -1.0
446,653 - ABID97_RS02205 0.70 -0.6
446,685 + ABID97_RS02205 0.71 -0.8
446,685 + ABID97_RS02205 0.71 -1.1
446,728 + ABID97_RS02205 0.74 +0.7
446,898 + ABID97_RS02205 0.84 -0.0
446,901 + ABID97_RS02205 0.84 -0.6
446,901 + ABID97_RS02205 0.84 -0.7
446,901 + ABID97_RS02205 0.84 +0.0
446,901 + ABID97_RS02205 0.84 -0.7
446,902 - ABID97_RS02205 0.84 +0.0
446,906 - ABID97_RS02205 0.85 -0.7
446,940 + ABID97_RS02205 0.87 +0.5
446,940 + ABID97_RS02205 0.87 -1.1
446,941 - ABID97_RS02205 0.87 -1.1
446,941 - ABID97_RS02205 0.87 -0.5
446,983 - ABID97_RS02205 0.89 -0.2
447,048 + -0.8
447,048 + -0.9
447,118 + -1.3
447,118 + -1.2
447,119 - -1.2
447,119 - -0.6
447,119 - -0.2
447,123 + -0.8
447,124 - -0.8
447,237 + +0.9
447,238 - -0.1
447,250 - -0.4
447,250 - -0.6
447,250 - -1.7
447,250 - +0.1
447,260 - -0.0
447,263 + -0.6
447,286 + -1.0
447,287 - -1.4
447,287 - -1.8
447,287 - -1.4
447,287 - +2.3
447,385 + ABID97_RS02210 0.26 +0.1
447,385 + ABID97_RS02210 0.26 +0.1
447,385 + ABID97_RS02210 0.26 -0.9
447,393 - ABID97_RS02210 0.27 -1.5
447,437 + ABID97_RS02210 0.36 +1.4
447,437 + ABID97_RS02210 0.36 +0.5
447,437 + ABID97_RS02210 0.36 -0.2
447,438 - ABID97_RS02210 0.37 -1.0
447,438 - ABID97_RS02210 0.37 -0.9
447,490 + ABID97_RS02210 0.47 -1.3
447,490 + ABID97_RS02210 0.47 -0.8
447,490 + ABID97_RS02210 0.47 -0.8
447,490 + ABID97_RS02210 0.47 -0.7
447,491 - ABID97_RS02210 0.47 -3.8
447,491 - ABID97_RS02210 0.47 -1.8
447,491 - ABID97_RS02210 0.47 -1.2
447,491 - ABID97_RS02210 0.47 -2.2
447,491 - ABID97_RS02210 0.47 -1.6
447,491 - ABID97_RS02210 0.47 -0.3
447,491 - ABID97_RS02210 0.47 -1.2
447,491 - ABID97_RS02210 0.47 -1.1
447,509 + ABID97_RS02210 0.51 -0.0
447,510 - ABID97_RS02210 0.51 -2.0
447,646 + ABID97_RS02210 0.79 -2.0
447,646 + ABID97_RS02210 0.79 +0.4
447,646 + ABID97_RS02210 0.79 +0.4
447,647 - ABID97_RS02210 0.79 -1.3
447,647 - ABID97_RS02210 0.79 -0.5
447,683 + ABID97_RS02210 0.86 +0.8
447,683 + ABID97_RS02210 0.86 -0.4
447,684 - ABID97_RS02210 0.87 -0.6
447,684 - ABID97_RS02210 0.87 -2.0
447,788 + -2.0
447,789 - -1.1
447,789 - +0.1
447,818 - -1.2
447,818 - -0.6
447,851 + -2.0
447,852 - -1.7
447,852 - -0.5
447,862 - -0.8
448,039 + +1.6
448,089 + ABID97_RS02215 0.15 +0.2
448,100 + ABID97_RS02215 0.17 +0.7
448,100 + ABID97_RS02215 0.17 +0.4
448,100 + ABID97_RS02215 0.17 +0.4
448,100 + ABID97_RS02215 0.17 -0.8
448,100 + ABID97_RS02215 0.17 +1.3
448,100 + ABID97_RS02215 0.17 +0.3
448,100 + ABID97_RS02215 0.17 +0.5
448,100 + ABID97_RS02215 0.17 +0.6
448,100 + ABID97_RS02215 0.17 +0.6
448,100 + ABID97_RS02215 0.17 +0.1
448,100 + ABID97_RS02215 0.17 +0.3
448,100 + ABID97_RS02215 0.17 -0.2
448,100 + ABID97_RS02215 0.17 +0.2
448,100 + ABID97_RS02215 0.17 +0.1
448,100 + ABID97_RS02215 0.17 +0.1
448,100 + ABID97_RS02215 0.17 +0.7
448,100 + ABID97_RS02215 0.17 +2.9
448,100 + ABID97_RS02215 0.17 -0.7
448,100 + ABID97_RS02215 0.17 +0.4
448,100 + ABID97_RS02215 0.17 -0.3
448,100 + ABID97_RS02215 0.17 -0.0
448,100 + ABID97_RS02215 0.17 +0.1
448,100 + ABID97_RS02215 0.17 +0.5
448,100 + ABID97_RS02215 0.17 +0.2
448,100 + ABID97_RS02215 0.17 +0.1
448,100 - ABID97_RS02215 0.17 +0.9
448,101 - ABID97_RS02215 0.17 -0.3
448,101 - ABID97_RS02215 0.17 +0.5
448,101 - ABID97_RS02215 0.17 +0.8
448,101 - ABID97_RS02215 0.17 +0.4
448,101 - ABID97_RS02215 0.17 -0.4
448,101 - ABID97_RS02215 0.17 +0.1
448,101 - ABID97_RS02215 0.17 +0.2
448,101 - ABID97_RS02215 0.17 +0.2
448,101 - ABID97_RS02215 0.17 +0.4
448,101 - ABID97_RS02215 0.17 +1.3
448,101 - ABID97_RS02215 0.17 +0.6
448,101 - ABID97_RS02215 0.17 +0.2
448,109 + ABID97_RS02215 0.18 +0.5
448,109 + ABID97_RS02215 0.18 -0.2
448,110 - ABID97_RS02215 0.18 +0.7

Or see this region's nucleotide sequence