Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02195 and ABID97_RS02200 are separated by 11 nucleotides ABID97_RS02200 and ABID97_RS02205 are separated by 41 nucleotides
ABID97_RS02195: ABID97_RS02195 - nucleotide sugar dehydrogenase, at 442,229 to 443,515
_RS02195
ABID97_RS02200: ABID97_RS02200 - nucleoside-diphosphate sugar epimerase/dehydratase, at 443,527 to 445,434
_RS02200
ABID97_RS02205: ABID97_RS02205 - Wzy polymerase domain-containing protein, at 445,476 to 447,167
_RS02205
Position (kb) 443
444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.592 kb on + strand, within ABID97_RS02195 at 442.592 kb on + strand, within ABID97_RS02195 at 442.592 kb on + strand, within ABID97_RS02195 at 442.593 kb on - strand, within ABID97_RS02195 at 442.627 kb on + strand, within ABID97_RS02195 at 442.627 kb on + strand, within ABID97_RS02195 at 442.627 kb on + strand, within ABID97_RS02195 at 442.628 kb on - strand, within ABID97_RS02195 at 442.628 kb on - strand, within ABID97_RS02195 at 442.628 kb on - strand, within ABID97_RS02195 at 442.642 kb on - strand, within ABID97_RS02195 at 442.642 kb on - strand, within ABID97_RS02195 at 442.642 kb on - strand, within ABID97_RS02195 at 442.695 kb on + strand, within ABID97_RS02195 at 442.695 kb on + strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.696 kb on - strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.716 kb on + strand, within ABID97_RS02195 at 442.717 kb on - strand at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.725 kb on + strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.726 kb on - strand, within ABID97_RS02195 at 442.728 kb on + strand, within ABID97_RS02195 at 442.729 kb on - strand, within ABID97_RS02195 at 442.833 kb on - strand, within ABID97_RS02195 at 442.864 kb on + strand, within ABID97_RS02195 at 442.892 kb on - strand, within ABID97_RS02195 at 442.930 kb on + strand, within ABID97_RS02195 at 442.930 kb on + strand, within ABID97_RS02195 at 442.941 kb on + strand, within ABID97_RS02195 at 442.941 kb on + strand, within ABID97_RS02195 at 442.942 kb on - strand, within ABID97_RS02195 at 442.942 kb on - strand, within ABID97_RS02195 at 442.942 kb on - strand, within ABID97_RS02195 at 443.039 kb on - strand, within ABID97_RS02195 at 443.074 kb on + strand, within ABID97_RS02195 at 443.075 kb on - strand, within ABID97_RS02195 at 443.177 kb on + strand, within ABID97_RS02195 at 443.178 kb on - strand, within ABID97_RS02195 at 443.178 kb on - strand at 443.184 kb on - strand, within ABID97_RS02195 at 443.184 kb on - strand, within ABID97_RS02195 at 443.185 kb on + strand, within ABID97_RS02195 at 443.185 kb on + strand, within ABID97_RS02195 at 443.186 kb on - strand, within ABID97_RS02195 at 443.186 kb on - strand, within ABID97_RS02195 at 443.273 kb on - strand, within ABID97_RS02195 at 443.277 kb on - strand, within ABID97_RS02195 at 443.277 kb on - strand, within ABID97_RS02195 at 443.281 kb on + strand, within ABID97_RS02195 at 443.396 kb on + strand at 443.396 kb on + strand at 443.396 kb on + strand at 443.436 kb on - strand at 443.481 kb on + strand at 443.482 kb on - strand at 443.534 kb on - strand at 443.561 kb on - strand at 443.575 kb on - strand at 443.618 kb on - strand at 443.808 kb on + strand, within ABID97_RS02200 at 443.808 kb on + strand, within ABID97_RS02200 at 443.809 kb on - strand, within ABID97_RS02200 at 443.869 kb on - strand, within ABID97_RS02200 at 443.946 kb on + strand, within ABID97_RS02200 at 443.958 kb on + strand, within ABID97_RS02200 at 443.959 kb on - strand, within ABID97_RS02200 at 444.043 kb on + strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.044 kb on - strand, within ABID97_RS02200 at 444.197 kb on - strand, within ABID97_RS02200 at 444.244 kb on - strand, within ABID97_RS02200 at 444.333 kb on - strand, within ABID97_RS02200 at 444.383 kb on + strand, within ABID97_RS02200 at 444.423 kb on + strand, within ABID97_RS02200 at 444.424 kb on - strand, within ABID97_RS02200 at 444.431 kb on - strand, within ABID97_RS02200 at 444.431 kb on - strand, within ABID97_RS02200 at 444.442 kb on - strand, within ABID97_RS02200 at 444.538 kb on - strand, within ABID97_RS02200 at 444.589 kb on + strand, within ABID97_RS02200 at 444.589 kb on + strand, within ABID97_RS02200 at 444.589 kb on + strand, within ABID97_RS02200 at 444.667 kb on - strand, within ABID97_RS02200 at 444.667 kb on - strand, within ABID97_RS02200 at 444.667 kb on - strand, within ABID97_RS02200 at 444.670 kb on + strand, within ABID97_RS02200 at 444.670 kb on + strand, within ABID97_RS02200 at 444.670 kb on + strand, within ABID97_RS02200 at 444.670 kb on + strand, within ABID97_RS02200 at 444.670 kb on + strand, within ABID97_RS02200 at 444.671 kb on - strand, within ABID97_RS02200 at 444.671 kb on - strand, within ABID97_RS02200 at 444.697 kb on - strand, within ABID97_RS02200 at 444.697 kb on - strand, within ABID97_RS02200 at 444.885 kb on + strand, within ABID97_RS02200 at 444.885 kb on + strand, within ABID97_RS02200 at 444.886 kb on - strand, within ABID97_RS02200 at 444.935 kb on + strand, within ABID97_RS02200 at 444.935 kb on + strand, within ABID97_RS02200 at 444.935 kb on + strand, within ABID97_RS02200 at 444.935 kb on + strand, within ABID97_RS02200 at 444.935 kb on + strand, within ABID97_RS02200 at 444.935 kb on + strand, within ABID97_RS02200 at 444.936 kb on - strand, within ABID97_RS02200 at 444.936 kb on - strand, within ABID97_RS02200 at 444.936 kb on - strand, within ABID97_RS02200 at 444.992 kb on + strand, within ABID97_RS02200 at 444.992 kb on + strand, within ABID97_RS02200 at 444.992 kb on + strand, within ABID97_RS02200 at 444.993 kb on - strand, within ABID97_RS02200 at 444.993 kb on - strand, within ABID97_RS02200 at 444.993 kb on - strand, within ABID97_RS02200 at 444.993 kb on - strand, within ABID97_RS02200 at 444.998 kb on - strand, within ABID97_RS02200 at 445.009 kb on + strand, within ABID97_RS02200 at 445.010 kb on - strand, within ABID97_RS02200 at 445.067 kb on - strand, within ABID97_RS02200 at 445.072 kb on + strand, within ABID97_RS02200 at 445.072 kb on + strand, within ABID97_RS02200 at 445.130 kb on + strand, within ABID97_RS02200 at 445.131 kb on - strand, within ABID97_RS02200 at 445.154 kb on - strand, within ABID97_RS02200 at 445.154 kb on - strand, within ABID97_RS02200 at 445.230 kb on + strand, within ABID97_RS02200 at 445.232 kb on + strand, within ABID97_RS02200 at 445.252 kb on + strand at 445.264 kb on + strand at 445.284 kb on - strand at 445.335 kb on + strand at 445.336 kb on - strand at 445.375 kb on + strand at 445.375 kb on + strand at 445.375 kb on + strand at 445.402 kb on - strand at 445.402 kb on - strand at 445.402 kb on - strand at 445.402 kb on - strand at 445.416 kb on + strand at 445.416 kb on + strand at 445.416 kb on + strand at 445.416 kb on + strand at 445.417 kb on - strand at 445.417 kb on - strand at 445.436 kb on + strand at 445.436 kb on + strand at 445.436 kb on + strand at 445.436 kb on + strand at 445.436 kb on + strand at 445.437 kb on - strand at 445.459 kb on + strand at 445.460 kb on - strand at 445.577 kb on + strand at 445.578 kb on - strand at 445.651 kb on + strand, within ABID97_RS02205 at 445.651 kb on + strand, within ABID97_RS02205 at 445.651 kb on + strand, within ABID97_RS02205 at 445.652 kb on - strand, within ABID97_RS02205 at 445.727 kb on + strand, within ABID97_RS02205 at 445.727 kb on + strand, within ABID97_RS02205 at 445.871 kb on - strand, within ABID97_RS02205 at 446.067 kb on - strand, within ABID97_RS02205 at 446.214 kb on - strand, within ABID97_RS02205 at 446.254 kb on + strand, within ABID97_RS02205 at 446.254 kb on + strand, within ABID97_RS02205 at 446.254 kb on + strand, within ABID97_RS02205 at 446.255 kb on - strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.394 kb on + strand, within ABID97_RS02205 at 446.395 kb on - strand, within ABID97_RS02205 at 446.405 kb on + strand, within ABID97_RS02205 at 446.425 kb on - strand, within ABID97_RS02205 at 446.425 kb on - strand, within ABID97_RS02205 at 446.434 kb on + strand, within ABID97_RS02205 at 446.434 kb on + strand, within ABID97_RS02205 at 446.434 kb on + strand, within ABID97_RS02205 at 446.434 kb on + strand, within ABID97_RS02205 at 446.434 kb on + strand, within ABID97_RS02205 at 446.434 kb on + strand, within ABID97_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 442,592 + ABID97_RS02195 0.28 +0.3 442,592 + ABID97_RS02195 0.28 +0.9 442,592 + ABID97_RS02195 0.28 -0.8 442,593 - ABID97_RS02195 0.28 +0.9 442,627 + ABID97_RS02195 0.31 -0.9 442,627 + ABID97_RS02195 0.31 +3.5 442,627 + ABID97_RS02195 0.31 +0.6 442,628 - ABID97_RS02195 0.31 +0.2 442,628 - ABID97_RS02195 0.31 +3.5 442,628 - ABID97_RS02195 0.31 +1.2 442,642 - ABID97_RS02195 0.32 +0.6 442,642 - ABID97_RS02195 0.32 +1.5 442,642 - ABID97_RS02195 0.32 +1.1 442,695 + ABID97_RS02195 0.36 +1.0 442,695 + ABID97_RS02195 0.36 +0.8 442,696 - ABID97_RS02195 0.36 +0.1 442,696 - ABID97_RS02195 0.36 +0.7 442,696 - ABID97_RS02195 0.36 +1.8 442,696 - ABID97_RS02195 0.36 +0.5 442,696 - ABID97_RS02195 0.36 +1.0 442,716 + ABID97_RS02195 0.38 -0.2 442,716 + ABID97_RS02195 0.38 +0.7 442,716 + ABID97_RS02195 0.38 +1.7 442,716 + ABID97_RS02195 0.38 +2.5 442,717 - +2.3 442,725 + ABID97_RS02195 0.39 +0.5 442,725 + ABID97_RS02195 0.39 +1.7 442,725 + ABID97_RS02195 0.39 +0.2 442,725 + ABID97_RS02195 0.39 +0.9 442,725 + ABID97_RS02195 0.39 +0.8 442,725 + ABID97_RS02195 0.39 +0.6 442,725 + ABID97_RS02195 0.39 +0.9 442,726 - ABID97_RS02195 0.39 +0.7 442,726 - ABID97_RS02195 0.39 +0.6 442,726 - ABID97_RS02195 0.39 +1.8 442,726 - ABID97_RS02195 0.39 +0.5 442,726 - ABID97_RS02195 0.39 +0.7 442,728 + ABID97_RS02195 0.39 +0.3 442,729 - ABID97_RS02195 0.39 +0.4 442,833 - ABID97_RS02195 0.47 +0.1 442,864 + ABID97_RS02195 0.49 -0.1 442,892 - ABID97_RS02195 0.52 +0.7 442,930 + ABID97_RS02195 0.54 +0.8 442,930 + ABID97_RS02195 0.54 +0.7 442,941 + ABID97_RS02195 0.55 +1.2 442,941 + ABID97_RS02195 0.55 +0.7 442,942 - ABID97_RS02195 0.55 +0.8 442,942 - ABID97_RS02195 0.55 +1.0 442,942 - ABID97_RS02195 0.55 +0.5 443,039 - ABID97_RS02195 0.63 +0.7 443,074 + ABID97_RS02195 0.66 +0.8 443,075 - ABID97_RS02195 0.66 +0.2 443,177 + ABID97_RS02195 0.74 +1.5 443,178 - ABID97_RS02195 0.74 +1.2 443,178 - +3.3 443,184 - ABID97_RS02195 0.74 +0.8 443,184 - ABID97_RS02195 0.74 -0.2 443,185 + ABID97_RS02195 0.74 +0.5 443,185 + ABID97_RS02195 0.74 +0.7 443,186 - ABID97_RS02195 0.74 +0.6 443,186 - ABID97_RS02195 0.74 +0.3 443,273 - ABID97_RS02195 0.81 +0.7 443,277 - ABID97_RS02195 0.81 +1.7 443,277 - ABID97_RS02195 0.81 +0.8 443,281 + ABID97_RS02195 0.82 +0.6 443,396 + +1.0 443,396 + +0.7 443,396 + -0.3 443,436 - +0.7 443,481 + +0.4 443,482 - +0.6 443,534 - -0.1 443,561 - -0.3 443,575 - -2.0 443,618 - -0.9 443,808 + ABID97_RS02200 0.15 -1.7 443,808 + ABID97_RS02200 0.15 -1.3 443,809 - ABID97_RS02200 0.15 -0.5 443,869 - ABID97_RS02200 0.18 -2.3 443,946 + ABID97_RS02200 0.22 -1.3 443,958 + ABID97_RS02200 0.23 -1.0 443,959 - ABID97_RS02200 0.23 -0.8 444,043 + ABID97_RS02200 0.27 -0.7 444,044 - ABID97_RS02200 0.27 +0.1 444,044 - ABID97_RS02200 0.27 -1.5 444,044 - ABID97_RS02200 0.27 -1.9 444,044 - ABID97_RS02200 0.27 -0.9 444,197 - ABID97_RS02200 0.35 -1.2 444,244 - ABID97_RS02200 0.38 -2.7 444,333 - ABID97_RS02200 0.42 -0.7 444,383 + ABID97_RS02200 0.45 -0.3 444,423 + ABID97_RS02200 0.47 -1.6 444,424 - ABID97_RS02200 0.47 -0.2 444,431 - ABID97_RS02200 0.47 -1.1 444,431 - ABID97_RS02200 0.47 -1.2 444,442 - ABID97_RS02200 0.48 -1.5 444,538 - ABID97_RS02200 0.53 -0.9 444,589 + ABID97_RS02200 0.56 -0.5 444,589 + ABID97_RS02200 0.56 -1.5 444,589 + ABID97_RS02200 0.56 -2.1 444,667 - ABID97_RS02200 0.60 -1.9 444,667 - ABID97_RS02200 0.60 -1.0 444,667 - ABID97_RS02200 0.60 -1.1 444,670 + ABID97_RS02200 0.60 -0.9 444,670 + ABID97_RS02200 0.60 -0.4 444,670 + ABID97_RS02200 0.60 -0.9 444,670 + ABID97_RS02200 0.60 -1.0 444,670 + ABID97_RS02200 0.60 +1.8 444,671 - ABID97_RS02200 0.60 +1.9 444,671 - ABID97_RS02200 0.60 -1.0 444,697 - ABID97_RS02200 0.61 -1.6 444,697 - ABID97_RS02200 0.61 -0.5 444,885 + ABID97_RS02200 0.71 -1.3 444,885 + ABID97_RS02200 0.71 -1.2 444,886 - ABID97_RS02200 0.71 -0.8 444,935 + ABID97_RS02200 0.74 -1.6 444,935 + ABID97_RS02200 0.74 -1.4 444,935 + ABID97_RS02200 0.74 -0.3 444,935 + ABID97_RS02200 0.74 -1.6 444,935 + ABID97_RS02200 0.74 -1.3 444,935 + ABID97_RS02200 0.74 -0.6 444,936 - ABID97_RS02200 0.74 -0.8 444,936 - ABID97_RS02200 0.74 -1.4 444,936 - ABID97_RS02200 0.74 -0.6 444,992 + ABID97_RS02200 0.77 -1.0 444,992 + ABID97_RS02200 0.77 -1.5 444,992 + ABID97_RS02200 0.77 -0.4 444,993 - ABID97_RS02200 0.77 -0.9 444,993 - ABID97_RS02200 0.77 -1.2 444,993 - ABID97_RS02200 0.77 -1.3 444,993 - ABID97_RS02200 0.77 -2.4 444,998 - ABID97_RS02200 0.77 -0.7 445,009 + ABID97_RS02200 0.78 -0.9 445,010 - ABID97_RS02200 0.78 -1.0 445,067 - ABID97_RS02200 0.81 -1.3 445,072 + ABID97_RS02200 0.81 -1.5 445,072 + ABID97_RS02200 0.81 -0.8 445,130 + ABID97_RS02200 0.84 -0.9 445,131 - ABID97_RS02200 0.84 -2.5 445,154 - ABID97_RS02200 0.85 +0.1 445,154 - ABID97_RS02200 0.85 -0.8 445,230 + ABID97_RS02200 0.89 -1.1 445,232 + ABID97_RS02200 0.89 -0.6 445,252 + -0.8 445,264 + +0.2 445,284 - +0.5 445,335 + -1.7 445,336 - +0.2 445,375 + -1.1 445,375 + -0.7 445,375 + -0.8 445,402 - -0.9 445,402 - +0.2 445,402 - -1.4 445,402 - -1.1 445,416 + -0.7 445,416 + -1.1 445,416 + -2.8 445,416 + -0.7 445,417 - -2.4 445,417 - -1.4 445,436 + -0.6 445,436 + +0.0 445,436 + +0.1 445,436 + -0.1 445,436 + +0.1 445,437 - -0.3 445,459 + +0.1 445,460 - +0.5 445,577 + -0.7 445,578 - +0.1 445,651 + ABID97_RS02205 0.10 -0.7 445,651 + ABID97_RS02205 0.10 -0.0 445,651 + ABID97_RS02205 0.10 -0.6 445,652 - ABID97_RS02205 0.10 +0.3 445,727 + ABID97_RS02205 0.15 +0.9 445,727 + ABID97_RS02205 0.15 -1.4 445,871 - ABID97_RS02205 0.23 -0.2 446,067 - ABID97_RS02205 0.35 -0.4 446,214 - ABID97_RS02205 0.44 -0.2 446,254 + ABID97_RS02205 0.46 -1.1 446,254 + ABID97_RS02205 0.46 -2.8 446,254 + ABID97_RS02205 0.46 -1.2 446,255 - ABID97_RS02205 0.46 -0.7 446,394 + ABID97_RS02205 0.54 -0.1 446,394 + ABID97_RS02205 0.54 -1.6 446,394 + ABID97_RS02205 0.54 -0.6 446,394 + ABID97_RS02205 0.54 -1.3 446,394 + ABID97_RS02205 0.54 -1.2 446,394 + ABID97_RS02205 0.54 -1.7 446,394 + ABID97_RS02205 0.54 +0.4 446,395 - ABID97_RS02205 0.54 -0.9 446,405 + ABID97_RS02205 0.55 +0.5 446,425 - ABID97_RS02205 0.56 -0.1 446,425 - ABID97_RS02205 0.56 -0.5 446,434 + ABID97_RS02205 0.57 -1.2 446,434 + ABID97_RS02205 0.57 -1.5 446,434 + ABID97_RS02205 0.57 -1.1 446,434 + ABID97_RS02205 0.57 -0.7 446,434 + ABID97_RS02205 0.57 -0.9 446,434 + ABID97_RS02205 0.57 +1.5
Or see this region's nucleotide sequence